RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 H0YIV9 168 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 SAP18O00422 153 aaKnown RBP12.89□□□□□ -0.35
SHMT2-219ENST00000555563 RTCAO00442 366 aaKnown RBP12.89□□□□□ -0.35
SHMT2-219ENST00000555563 PRMT3O60678 531 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 ITGAMP11215 1152 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 SOX11P35716 441 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 HSD17B3P37058 310 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 CCNG1P51959 295 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 HNRNPFP52597 415 aaKnown RBP12.89□□□□□ -0.35
SHMT2-219ENST00000555563 OR4D2P58180 307 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 TRAF3Q13114 568 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 MFAP5Q13361 173 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 CPSF6Q16630 551 aaKnown RBP eCLIP12.89□□□□□ -0.35
SHMT2-219ENST00000555563 BTBD16Q32M84 506 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 TMEM35AQ53FP2 167 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 PRR30Q53SZ7 412 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-219ENST00000555563 CRB2Q5IJ48 1285 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 KHDRBS2Q5VWX1 349 aaKnown RBP12.89□□□□□ -0.35
SHMT2-219ENST00000555563 PLAG1Q6DJT9 500 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 IGFL2Q6UWQ7 119 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 ISLR2Q6UXK2 745 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 LINC00696Q6ZRV3 163 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 RPS27LQ71UM5 84 aaKnown RBP12.89□□□□□ -0.35
SHMT2-219ENST00000555563 TDRPQ86YL5 185 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 CNPY4Q8N129 248 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 ZADH2Q8N4Q0 377 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 L3MBTL4Q8NA19 623 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 TMEM52Q8NDY8 209 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 ZNF483Q8TF39 744 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-219ENST00000555563 CMTM7Q96FZ5 175 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 PTCHD1Q96NR3 888 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 CSF3RQ99062 836 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 OR51B5Q9H339 312 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 EPS8L2Q9H6S3 715 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 PPCSQ9HAB8 311 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 SEMA4BQ9NPR2 832 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-219ENST00000555563 NECTIN3Q9NQS3 549 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 PRDM9Q9NQV7 894 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 PRDM7Q9NQW5 492 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 PTGFRNQ9P2B2 879 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 ADGRE2Q9UHX3 823 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 B3GNT3Q9Y2A9 372 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 TSC22D4Q9Y3Q8 395 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 CPAMD8Q8IZJ3 1885 aa12.89□□□□□ -0.35
SHMT2-219ENST00000555563 A0A1B0GTL3 188 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 TTLL8A6PVC2 850 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 SCELO95171 688 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 CLDN9O95484 217 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 ICAM2P13598 275 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 ATP5A1P25705 553 aaKnown RBP12.88□□□□□ -0.35
SHMT2-219ENST00000555563 PIK3CBP42338 1070 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 SSR2P43308 183 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 LIM2P55344 173 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 AP2B1P63010 937 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 PHEXP78562 749 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 ZRSR2Q15696 482 aaKnown RBP12.88□□□□□ -0.35
SHMT2-219ENST00000555563 EXT1Q16394 746 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 B3GNTL1Q67FW5 361 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-219ENST00000555563 CYP4X1Q8N118 509 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 SRFBP1Q8NEF9 429 aaKnown RBP12.88□□□□□ -0.35
SHMT2-219ENST00000555563 ADAMTS18Q8TE60 1221 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 PPP4R1Q8TF05 950 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 AENQ8WTP8 325 aaKnown RBP12.88□□□□□ -0.35
SHMT2-219ENST00000555563 ATP6V1E2Q96A05 226 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 REPS1Q96D71 796 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 LPAR4Q99677 370 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 TBCDQ9BTW9 1192 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 SORBS1Q9BX66 1292 aaKnown RBP12.88□□□□□ -0.35
SHMT2-219ENST00000555563 C1QTNF3Q9BXJ4 246 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 ROGDIQ9GZN7 287 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 ILKAPQ9H0C8 392 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-219ENST00000555563 SLAMF7Q9NQ25 335 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 DAPP1Q9UN19 280 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 PLAAQ9Y263 795 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 MMACHCQ9Y4U1 282 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 SCN2AQ99250 2005 aa12.88□□□□□ -0.35
SHMT2-219ENST00000555563 TCRBV16S1A1N1A0A5B0 115 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 TGFBR3LH3BV60 316 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 CYR61O00622 381 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 PLPP1O14494 284 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 DLX3O60479 287 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 ETHE1O95571 254 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 UQCRHP07919 91 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 GSTA1P08263 222 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 KRT15P19012 456 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 TSPAN8P19075 237 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 TAC1P20366 129 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 HIST1H1TP22492 207 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-219ENST00000555563 NEK2P51955 445 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 RAP1GDS1P52306 607 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 CDH13P55290 713 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 RPS13P62277 151 aaKnown RBP12.87□□□□□ -0.35
SHMT2-219ENST00000555563 HERVK_113P63132 956 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 FOXK1P85037 733 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 ACTN3Q08043 901 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-219ENST00000555563 RASA2Q15283 850 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 IGFBP7Q16270 282 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 PLEKHN1Q494U1 663 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-219ENST00000555563 DEPDC1Q5TB30 811 aa12.87□□□□□ -0.35
SHMT2-219ENST00000555563 WDR93Q6P2C0 686 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms