RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 RAB38P57729 211 aa19.24■□□□□ 0.67
VTI1B-205ENST00000555543 ACTN3Q08043 901 aaPredicted RBP19.24■□□□□ 0.67
VTI1B-205ENST00000555543 DDX39BQ13838 428 aaKnown RBP19.24■□□□□ 0.67
VTI1B-205ENST00000555543 TIFABQ6ZNK6 161 aa19.24■□□□□ 0.67
VTI1B-205ENST00000555543 TMEM151AQ8N4L1 468 aa19.24■□□□□ 0.67
VTI1B-205ENST00000555543 MAGEB10Q96LZ2 347 aaPredicted RBP19.24■□□□□ 0.67
VTI1B-205ENST00000555543 NSUN5Q96P11 429 aaKnown RBP19.24■□□□□ 0.67
VTI1B-205ENST00000555543 SERINC2Q96SA4 455 aa19.24■□□□□ 0.67
VTI1B-205ENST00000555543 LPAR4Q99677 370 aa19.24■□□□□ 0.67
VTI1B-205ENST00000555543 IPPKQ9H8X2 491 aa19.24■□□□□ 0.67
VTI1B-205ENST00000555543 ACTR8Q9H981 624 aa19.24■□□□□ 0.67
VTI1B-205ENST00000555543 PRDM9Q9NQV7 894 aa19.24■□□□□ 0.67
VTI1B-205ENST00000555543 ASF1BQ9NVP2 202 aa19.24■□□□□ 0.67
VTI1B-205ENST00000555543 MAP10Q9P2G4 905 aa19.24■□□□□ 0.67
VTI1B-205ENST00000555543 CLDN16Q9Y5I7 305 aa19.24■□□□□ 0.67
VTI1B-205ENST00000555543 TNPO3Q9Y5L0 923 aaKnown RBP19.24■□□□□ 0.67
VTI1B-205ENST00000555543 OR7A17O14581 309 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 MTTPP55157 894 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 LIM2P55344 173 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 SLC26A5P58743 744 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 AP2B1P63010 937 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 ZNF169Q14929 603 aaPredicted RBP19.23■□□□□ 0.67
VTI1B-205ENST00000555543 EXT1Q16394 746 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 LIPJQ5W064 366 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 FCRLBQ6BAA4 426 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 ATCAYQ86WG3 371 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 SCUBE1Q8IWY4 988 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 EIF1ADQ8N9N8 165 aaKnown RBP19.23■□□□□ 0.67
VTI1B-205ENST00000555543 HUS1BQ8NHY5 278 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 M1APQ8TC57 530 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 MTBPQ96DY7 904 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 KCNC2Q96PR1 638 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 MTERF1Q99551 399 aaKnown RBP19.23■□□□□ 0.67
VTI1B-205ENST00000555543 NPAS2Q99743 824 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 MRPL57Q9BQC6 102 aaKnown RBP19.23■□□□□ 0.67
VTI1B-205ENST00000555543 MRPL46Q9H2W6 279 aaKnown RBP19.23■□□□□ 0.67
VTI1B-205ENST00000555543 OR51B5Q9H339 312 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 COPS7BQ9H9Q2 264 aaPredicted RBP19.23■□□□□ 0.67
VTI1B-205ENST00000555543 MMP25Q9NPA2 562 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 DMRT3Q9NQL9 472 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 PCTPQ9UKL6 214 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 DAPP1Q9UN19 280 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 RNF11Q9Y3C5 154 aa19.23■□□□□ 0.67
VTI1B-205ENST00000555543 USP9XQ93008 2570 aaPredicted RBP19.23■□□□□ 0.67
VTI1B-205ENST00000555543 A8MUI8 341 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 STX16-NPEPL1H3BU86 382 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 SAP18O00422 153 aaKnown RBP19.22■□□□□ 0.67
VTI1B-205ENST00000555543 CYR61O00622 381 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 STX16O14662 325 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 ZNF500O60304 480 aaPredicted RBP19.22■□□□□ 0.67
VTI1B-205ENST00000555543 SMIM24O75264 130 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 WDPCPO95876 746 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 GNLYP22749 145 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 TNFRSF8P28908 595 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 SERPINB1P30740 379 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 PIK3CGP48736 1102 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 ARG2P78540 354 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 ZNF33BQ06732 778 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 TGM3Q08188 693 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 TLR1Q15399 786 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 LGSNQ5TDP6 509 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 KHDRBS2Q5VWX1 349 aaKnown RBP19.22■□□□□ 0.67
VTI1B-205ENST00000555543 H3F3CQ6NXT2 135 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 METTL2BQ6P1Q9 378 aaKnown RBP19.22■□□□□ 0.67
VTI1B-205ENST00000555543 RPS27LQ71UM5 84 aaKnown RBP19.22■□□□□ 0.67
VTI1B-205ENST00000555543 CYP4X1Q8N118 509 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 L3MBTL4Q8NA19 623 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 GALNT11Q8NCW6 608 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 OR52B6Q8NGF0 335 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 MZB1Q8WU39 189 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 CDK15Q96Q40 435 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 SORBS1Q9BX66 1292 aaKnown RBP19.22■□□□□ 0.67
VTI1B-205ENST00000555543 NOL11Q9H8H0 719 aaKnown RBP19.22■□□□□ 0.67
VTI1B-205ENST00000555543 ANKZF1Q9H8Y5 726 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 ZBTB26Q9HCK0 441 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 PRM3Q9NNZ6 103 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 KCMF1Q9P0J7 381 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 PSMC3IPQ9P2W1 217 aaPredicted RBP19.22■□□□□ 0.67
VTI1B-205ENST00000555543 FETUBQ9UGM5 382 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 MMACHCQ9Y4U1 282 aa19.22■□□□□ 0.67
VTI1B-205ENST00000555543 DYTNA2CJ06 578 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 SAGE2PA6NJ88 616 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 A8MT66 165 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 A8MUA0 341 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 TCP11X1B4DZS4 312 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 H0YIV9 168 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 MAN1A2O60476 641 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 UGDHO60701 494 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 VPS4BO75351 444 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 SCELO95171 688 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 SHBGP04278 402 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 ATP5A1P25705 553 aaKnown RBP19.21■□□□□ 0.67
VTI1B-205ENST00000555543 PPP2R1BP30154 601 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 PIK3CBP42338 1070 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 TSFMP43897 325 aaKnown RBP19.21■□□□□ 0.67
VTI1B-205ENST00000555543 TNFSF10P50591 281 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 SRSF1Q07955 248 aaKnown RBP eCLIP19.21■□□□□ 0.67
VTI1B-205ENST00000555543 CPSF6Q16630 551 aaKnown RBP eCLIP19.21■□□□□ 0.67
VTI1B-205ENST00000555543 TMEM35AQ53FP2 167 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 ABHD17BQ5VST6 288 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms