RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 KLHL2O95198 593 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 MLYCDO95822 493 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 B3GALT4O96024 378 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 C2P06681 752 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 MTHFD2P13995 350 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 EPB42P16452 691 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 CD22P20273 847 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 CNTFP26441 200 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 TRHRP34981 398 aaPredicted RBP11.09□□□□□ -0.63
VRK1-204ENST00000555351 PIK3CGP48736 1102 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 SERPINB8P50452 374 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 SERPINB9P50453 376 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 ALDH18A1P54886 795 aaKnown RBP11.09□□□□□ -0.63
VRK1-204ENST00000555351 BTG2P78543 158 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 CHIT1Q13231 466 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 TUBA3CQ13748 450 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 EFTUD2Q15029 972 aaKnown RBP eCLIP11.09□□□□□ -0.639e-7■■■■□ 20.8
VRK1-204ENST00000555351 SETDB1Q15047 1291 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 ZNF766Q5HY98 468 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 MROH9Q5TGP6 573 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 MED27Q6P2C8 311 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 KLC3Q6P597 504 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 TUBA3EQ6PEY2 450 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 CHSY3Q70JA7 882 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 TAOK1Q7L7X3 1001 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 VN1R5Q7Z5H4 357 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 RPS19BP1Q86WX3 136 aaKnown RBP11.09□□□□□ -0.63
VRK1-204ENST00000555351 BEST3Q8N1M1 668 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 TMEM178AQ8NBL3 297 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 MDS2Q8NDY4 140 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 B3GNT7Q8NFL0 401 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 ZNF473Q8WTR7 871 aaKnown RBP11.09□□□□□ -0.63
VRK1-204ENST00000555351 CCT6BQ92526 530 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 NXNL1Q96CM4 212 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 SCMH1Q96GD3 660 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 TAAR6Q96RI8 345 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 NPAS2Q99743 824 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 MS4A8Q9BY19 250 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 COPS7BQ9H9Q2 264 aaPredicted RBP11.09□□□□□ -0.63
VRK1-204ENST00000555351 SNX15Q9NRS6 342 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 PSD3Q9NYI0 1048 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 NINJ2Q9NZG7 142 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 PLEKHB1Q9UF11 243 aaPredicted RBP11.09□□□□□ -0.63
VRK1-204ENST00000555351 ERRFI1Q9UJM3 462 aaPredicted RBP11.09□□□□□ -0.63
VRK1-204ENST00000555351 TMCO1Q9UM00 188 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 DAPP1Q9UN19 280 aa11.09□□□□□ -0.63
VRK1-204ENST00000555351 TNPO3Q9Y5L0 923 aaKnown RBP11.09□□□□□ -0.63
VRK1-204ENST00000555351 A0A096LPK6 155 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 SUPT3HB4E1H0 165 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 CYR61O00622 381 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 CTNSO60931 367 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 SUPT3HO75486 399 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 CTAGE8P0CG41 777 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 COL6A2P12110 1019 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 CD46P15529 392 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 MAOAP21397 527 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 TYK2P29597 1187 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 CD96P40200 585 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 PIK3CBP42338 1070 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 MAGEA12P43365 314 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 LIM2P55344 173 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 BIKQ13323 160 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 RUNX2Q13950 521 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 PCBP2Q15366 365 aaKnown RBP eCLIP11.08□□□□□ -0.649e-13■■■■■ 58.5
VRK1-204ENST00000555351 C10orf62Q5T681 223 aaPredicted RBP11.08□□□□□ -0.64
VRK1-204ENST00000555351 LIPJQ5W064 366 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 GRHL2Q6ISB3 625 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 CTAGE4Q8IX94 777 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 SLC44A1Q8WWI5 657 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 RELTQ969Z4 430 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 ESAMQ96AP7 390 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 CMTM7Q96FZ5 175 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 FMO2Q99518 471 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 ADAP2Q9NPF8 381 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 NECTIN3Q9NQS3 549 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 PRDM7Q9NQW5 492 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 PRTFDC1Q9NRG1 225 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 RYDENQ9NUL5 291 aaKnown RBP11.08□□□□□ -0.64
VRK1-204ENST00000555351 DMGDHQ9UI17 866 aaKnown RBP11.08□□□□□ -0.64
VRK1-204ENST00000555351 ZNF180Q9UJW8 692 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 PCDHGA11Q9Y5H2 935 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 SPACA6W5XKT8 324 aa11.08□□□□□ -0.64
VRK1-204ENST00000555351 COL12A1Q99715 3063 aa11.07□□□□□ -0.64
VRK1-204ENST00000555351 POLEQ07864 2286 aa11.07□□□□□ -0.64
VRK1-204ENST00000555351 HIVEP3Q5T1R4 2406 aa11.07□□□□□ -0.64
VRK1-204ENST00000555351 CNTRLQ7Z7A1 2325 aa11.07□□□□□ -0.64
VRK1-204ENST00000555351 DOPEY1Q5JWR5 2465 aa11.07□□□□□ -0.64
VRK1-204ENST00000555351 ASPDHA6ND91 283 aa11.07□□□□□ -0.64
VRK1-204ENST00000555351 GABRR3A8MPY1 467 aa11.07□□□□□ -0.64
VRK1-204ENST00000555351 FAM227AF5H4B4 570 aa11.07□□□□□ -0.64
VRK1-204ENST00000555351 UBXN8O00124 270 aa11.07□□□□□ -0.64
VRK1-204ENST00000555351 ALDOAP04075 364 aaKnown RBP11.07□□□□□ -0.64
VRK1-204ENST00000555351 MSH2P43246 934 aa11.07□□□□□ -0.64
VRK1-204ENST00000555351 CLCN2P51788 898 aa11.07□□□□□ -0.64
VRK1-204ENST00000555351 PLA2G16P53816 162 aa11.07□□□□□ -0.64
VRK1-204ENST00000555351 MLF1P58340 268 aa11.07□□□□□ -0.64
VRK1-204ENST00000555351 OR1C1Q15619 314 aa11.07□□□□□ -0.64
VRK1-204ENST00000555351 ELAVL1Q15717 326 aaKnown RBP11.07□□□□□ -0.64
VRK1-204ENST00000555351 CYP4X1Q8N118 509 aa11.07□□□□□ -0.64
VRK1-204ENST00000555351 TMEM132CQ8N3T6 1108 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms