RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 LRTM1Q9HBL6 345 aa11.58□□□□□ -0.56
SHMT2-209ENST00000553949 RIC8BQ9NVN3 520 aa11.58□□□□□ -0.56
SHMT2-209ENST00000553949 C1orf109Q9NX04 203 aa11.58□□□□□ -0.56
SHMT2-209ENST00000553949 TRPC4Q9UBN4 977 aa11.58□□□□□ -0.56
SHMT2-209ENST00000553949 CTSFQ9UBX1 484 aa11.58□□□□□ -0.56
SHMT2-209ENST00000553949 ADAM29Q9UKF5 820 aa11.58□□□□□ -0.56
SHMT2-209ENST00000553949 CROTQ9UKG9 612 aa11.58□□□□□ -0.56
SHMT2-209ENST00000553949 MAP4K5Q9Y4K4 846 aa11.58□□□□□ -0.56
SHMT2-209ENST00000553949 USH1CQ9Y6N9 552 aa11.58□□□□□ -0.56
SHMT2-209ENST00000553949 ASPMQ8IZT6 3477 aa11.58□□□□□ -0.56
SHMT2-209ENST00000553949 SPTBP11277 2137 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 NCOR2Q9Y618 2525 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 FREM2Q5SZK8 3169 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 ARHGAP10A1A4S6 786 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 ZNF195O14628 629 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 TLX3O43711 291 aaPredicted RBP11.57□□□□□ -0.56
SHMT2-209ENST00000553949 TMPRSS11DO60235 418 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 PEX11AO75192 247 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 SEC22BO75396 215 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 ALBP02768 609 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 GBAP04062 536 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 VIMP08670 466 aaKnown RBP11.57□□□□□ -0.56
SHMT2-209ENST00000553949 TCN2P20062 427 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 TPP2P29144 1249 aaPredicted RBP11.57□□□□□ -0.56
SHMT2-209ENST00000553949 LIM2P55344 173 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 RAE1P78406 368 aaKnown RBP11.57□□□□□ -0.56
SHMT2-209ENST00000553949 KIAA0040Q15053 153 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 NCF4Q15080 339 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 ATP6AP1LQ52LC2 224 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 CCNYL2Q5T2Q4 361 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 VWA5B1Q5TIE3 1220 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 MLIPQ5VWP3 458 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 MRPL14Q6P1L8 145 aaKnown RBP11.57□□□□□ -0.56
SHMT2-209ENST00000553949 GALNT18Q6P9A2 607 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 IL22RA1Q8N6P7 574 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 SNIP1Q8TAD8 396 aaKnown RBP11.57□□□□□ -0.56
SHMT2-209ENST00000553949 FKBP10Q96AY3 582 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 TUBGCP3Q96CW5 907 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 C11orf24Q96F05 449 aaPredicted RBP11.57□□□□□ -0.56
SHMT2-209ENST00000553949 PPP3R2Q96LZ3 170 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 SLC26A1Q9H2B4 701 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 AKTIPQ9H8T0 292 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 LYRM4Q9HD34 91 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 MKKSQ9NPJ1 570 aaPredicted RBP11.57□□□□□ -0.56
SHMT2-209ENST00000553949 SIRT5Q9NXA8 310 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 ZNF282Q9UDV7 671 aaPredicted RBP11.57□□□□□ -0.56
SHMT2-209ENST00000553949 GIMAP2Q9UG22 337 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 GPN3Q9UHW5 284 aaPredicted RBP11.57□□□□□ -0.56
SHMT2-209ENST00000553949 DAPP1Q9UN19 280 aa11.57□□□□□ -0.56
SHMT2-209ENST00000553949 IGLV3-12A0A075B6K2 115 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 LOC101059948A0A1B0GTJ6 334 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 VSTM2BA6NLU5 285 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 C21orf140B9A014 251 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 SDHDO14521 159 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 TERTO14746 1132 aaKnown RBP11.56□□□□□ -0.56
SHMT2-209ENST00000553949 PCDH7O60245 1069 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 VPS4BO75351 444 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 MYO1DO94832 1006 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 TGDSO95455 350 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 CAPNS1P04632 268 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 RAB40ALP0C0E4 278 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 FAM58BPP0C7Q3 252 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 ALOX15P16050 662 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-209ENST00000553949 TIA1P31483 386 aaKnown RBP eCLIP11.56□□□□□ -0.56
SHMT2-209ENST00000553949 DLSTP36957 453 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 XCR1P46094 333 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 MAPK12P53778 367 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 RPL38P63173 70 aaKnown RBP11.56□□□□□ -0.56
SHMT2-209ENST00000553949 OCA2Q04671 838 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 CLN3Q13286 438 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 DNASE1L3Q13609 305 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 NKG7Q16617 165 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 GALNTL6Q49A17 601 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 RFTN2Q52LD8 501 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-209ENST00000553949 VWA2Q5GFL6 755 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 MRM1Q6IN84 353 aaKnown RBP11.56□□□□□ -0.56
SHMT2-209ENST00000553949 GPR180Q86V85 440 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 ZC3H7AQ8IWR0 971 aaKnown RBP11.56□□□□□ -0.56
SHMT2-209ENST00000553949 LRRC34Q8IZ02 419 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 ENDOVQ8N8Q3 282 aaKnown RBP11.56□□□□□ -0.56
SHMT2-209ENST00000553949 ZNF248Q8NDW4 579 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 STT3BQ8TCJ2 826 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 TBC1D20Q96BZ9 403 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 PEX11GQ96HA9 241 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 NAF1Q96HR8 494 aaKnown RBP11.56□□□□□ -0.56
SHMT2-209ENST00000553949 FCRL1Q96LA6 429 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 ZNF317Q96PQ6 595 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-209ENST00000553949 MAPKAP1Q9BPZ7 522 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 EBPLQ9BY08 206 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 GPR87Q9BY21 358 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 TGIF2Q9GZN2 237 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 WDR55Q9H6Y2 383 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-209ENST00000553949 WDR54Q9H977 334 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 FGFR1OP2Q9NVK5 253 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 LYARQ9NX58 379 aaKnown RBP11.56□□□□□ -0.56
SHMT2-209ENST00000553949 KCMF1Q9P0J7 381 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 PHF11Q9UIL8 331 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 MCM8Q9UJA3 840 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 TMED5Q9Y3A6 229 aa11.56□□□□□ -0.56
SHMT2-209ENST00000553949 POLR3HQ9Y535 204 aaPredicted RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms