RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 FBXL4Q9UKA2 621 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 KALRNO60229 2985 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 A0A088AWK7 358 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 FOXE1O00358 373 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-226ENST00000553011 PLPP1O14494 284 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 ACPPP15309 386 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 ZNF10P21506 573 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-226ENST00000553011 IL10P22301 178 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 ATP5A1P25705 553 aaKnown RBP13.3□□□□□ -0.28
PTCH1-226ENST00000553011 PTX3P26022 381 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-226ENST00000553011 SSR2P43308 183 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 CCL11P51671 97 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 RAP1GDS1P52306 607 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 RRADP55042 308 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 PKNOX1P55347 436 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 RHAGQ02094 409 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 EEF1A2Q05639 463 aaKnown RBP13.3□□□□□ -0.28
PTCH1-226ENST00000553011 AP5B1Q2VPB7 878 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 TUBB8Q3ZCM7 444 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 SOWAHCQ53LP3 525 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-226ENST00000553011 CFAP157Q5JU67 520 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 DCAF10Q5QP82 559 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 TMEM205Q6UW68 189 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 LANCL3Q6ZV70 420 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 MED25Q71SY5 747 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 ACOT4Q8N9L9 421 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 TMEM102Q8N9M5 508 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-226ENST00000553011 MYRIPQ8NFW9 859 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 AGAP11Q8TF27 550 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 TSLPQ969D9 159 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 RGMAQ96B86 450 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 NACC2Q96BF6 587 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 PGM2Q96G03 612 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 WBP1Q96G27 269 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 MAGEB10Q96LZ2 347 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-226ENST00000553011 KCNA7Q96RP8 456 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 HBEGFQ99075 208 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 NPLQ9BXD5 320 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-226ENST00000553011 SEMA4CQ9C0C4 833 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 MID1IP1Q9NPA3 183 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 PPT2Q9UMR5 302 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 STK38LQ9Y2H1 464 aa13.3□□□□□ -0.28
PTCH1-226ENST00000553011 A6NL46 340 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 PSMD12O00232 456 aaPredicted RBP13.29□□□□□ -0.28
PTCH1-226ENST00000553011 MANBAO00462 879 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 TRIM13O60858 407 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 SCELO95171 688 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 ESRRBO95718 433 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 PDYNP01213 254 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 C8orf89P0DMQ9 161 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 COX6A1P12074 109 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 HIST1H1TP22492 207 aaPredicted RBP13.29□□□□□ -0.28
PTCH1-226ENST00000553011 HMOX2P30519 316 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 ETV4P43268 484 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 HTR6P50406 440 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 HNRNPFP52597 415 aaKnown RBP13.29□□□□□ -0.28
PTCH1-226ENST00000553011 LIM2P55344 173 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 RAB38P57729 211 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 BTG2P78543 158 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 KCNAB2Q13303 367 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 CUL3Q13618 768 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 OR4C11Q6IEV9 310 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 AMER2Q8N7J2 671 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 FAM47BQ8NA70 645 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 TMEM52Q8NDY8 209 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 METTL6Q8TCB7 284 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 SELENOMQ8WWX9 145 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 METTL21AQ8WXB1 218 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 SLC39A7Q92504 469 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 FER1L6-AS2Q96M78 137 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 CSF3RQ99062 836 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 SERPINI1Q99574 410 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 MAPKAP1Q9BPZ7 522 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 CENPKQ9BS16 269 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 ZNF717Q9BY31 904 aaPredicted RBP13.29□□□□□ -0.28
PTCH1-226ENST00000553011 SLC29A3Q9BZD2 475 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 SHCBP1LQ9BZQ2 653 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 ROGDIQ9GZN7 287 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 SSU72Q9NP77 194 aaKnown RBP13.29□□□□□ -0.28
PTCH1-226ENST00000553011 TNFRSF12AQ9NP84 129 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 PSD3Q9NYI0 1048 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 DAPP1Q9UN19 280 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 SNX6Q9UNH7 406 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 TIMM22Q9Y584 194 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 BOD1L1Q8NFC6 3051 aa13.29□□□□□ -0.28
PTCH1-226ENST00000553011 LOC102723996A0A087X1L8 192 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 IGHV3-20A0A0C4DH32 117 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 EEDO75530 441 aaKnown RBP13.28□□□□□ -0.28
PTCH1-226ENST00000553011 KRT6AP02538 564 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 KRT6BP04259 564 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 ENO1P06733 434 aaKnown RBP13.28□□□□□ -0.28
PTCH1-226ENST00000553011 CYC1P08574 325 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 MYZAPP0CAP1 466 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 H2AFXP16104 143 aaPredicted RBP13.28□□□□□ -0.28
PTCH1-226ENST00000553011 MAOAP21397 527 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 JAK1P23458 1154 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 BSGP35613 385 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 KRT6CP48668 564 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 FOXA1P55317 472 aa13.28□□□□□ -0.28
PTCH1-226ENST00000553011 NAA20P61599 178 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms