RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 ARL15Q9NXU5 204 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 ERVK-11Q9UQG0 969 aa16.55■□□□□ 0.24
CLSTN3-214ENST00000542663 OR14I1A6ND48 311 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 GOLGA8MH3BSY2 632 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 PSMD12O00232 456 aaPredicted RBP16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 FAM155BO75949 473 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 OR6B1O95007 311 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 GABRB3P28472 473 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 ADH7P40394 386 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 HNRNPFP52597 415 aaKnown RBP16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 PPP2R2AP63151 447 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 REEP5Q00765 189 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 PLGLB1Q02325 96 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 SNTB1Q13884 538 aaKnown RBP16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 UGT3A1Q6NUS8 523 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 ZNF585AQ6P3V2 769 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 IL20RBQ6UXL0 311 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 ZZZ3Q8IYH5 903 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 TBC1D19Q8N5T2 526 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 TMEM52Q8NDY8 209 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 MCUQ8NE86 351 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 SLC5A11Q8WWX8 675 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 LINGO1Q96FE5 620 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 SIGLEC10Q96LC7 697 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 SMC6Q96SB8 1091 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 XAB2Q9HCS7 855 aaKnown RBP16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 IARS2Q9NSE4 1012 aaKnown RBP16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 RPH3AQ9Y2J0 694 aaPredicted RBP16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 MMACHCQ9Y4U1 282 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 NINQ8N4C6 2090 aa16.54■□□□□ 0.24
CLSTN3-214ENST00000542663 A0A1B0GVC2 190 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 A8MVJ9 347 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 G3V3Y1 287 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 ACOT7O00154 380 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 HIST1H2AGP0C0S8 130 aaPredicted RBP16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 HIST1H2ADP20671 130 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 SOX3P41225 446 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 MAGEA5P43359 124 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 PGGT1BP53609 377 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 CSHL1Q14406 222 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 ARSKQ6UWY0 536 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 B3GNT6Q6ZMB0 384 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 RGS9BPQ6ZS82 235 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 GPALPP1Q8IXQ4 340 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 C2CD4AQ8NCU7 369 aaPredicted RBP16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 CREB3L4Q8TEY5 395 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 MAIP1Q8WWC4 291 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 FBXL8Q96CD0 374 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 HIST1H2AHQ96KK5 128 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 HIST1H2AJQ99878 128 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 GPATCH1Q9BRR8 931 aaKnown RBP16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 H2AFJQ9BTM1 129 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 HPF1Q9NWY4 346 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 TAS2R13Q9NYV9 303 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 KIAA1549Q9HCM3 1950 aa16.53■□□□□ 0.24
CLSTN3-214ENST00000542663 URADA6NGE7 173 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 FIGNL2A6NMB9 653 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 BCKDKO14874 412 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 PROM1O43490 865 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 KRT14P02533 472 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 CELA3AP09093 270 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 AP1S2P56377 157 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 RUNX2Q13950 521 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 ZNF750Q32MQ0 723 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 TOR1AIP1Q5JTV8 583 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 HECTD2Q5U5R9 776 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 TTC27Q6P3X3 843 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 TRILQ7L0X0 811 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 SLC22A16Q86VW1 577 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 TMEM251Q8N6I4 163 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 TRPV3Q8NET8 790 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 MYRIPQ8NFW9 859 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 SREK1Q8WXA9 508 aaKnown RBP16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 ASB15Q8WXK1 588 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 RASL10BQ96S79 203 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 CCDC77Q9BR77 488 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 FAM167BQ9BTA0 163 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 CLEC4MQ9H2X3 399 aaPredicted RBP16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 PELI2Q9HAT8 420 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 RASSF1Q9NS23 344 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 MYOTQ9UBF9 498 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 IKZF3Q9UKT9 509 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 PLEKHA6Q9Y2H5 1048 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 MAD1L1Q9Y6D9 718 aa16.52■□□□□ 0.24
CLSTN3-214ENST00000542663 ZFAND5O76080 213 aa16.51■□□□□ 0.23
CLSTN3-214ENST00000542663 GUCA1CO95843 209 aa16.51■□□□□ 0.23
CLSTN3-214ENST00000542663 SERPINA6P08185 405 aa16.51■□□□□ 0.23
CLSTN3-214ENST00000542663 ADAM8P78325 824 aa16.51■□□□□ 0.23
CLSTN3-214ENST00000542663 NDUFAF5Q5TEU4 345 aa16.51■□□□□ 0.23
CLSTN3-214ENST00000542663 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.51■□□□□ 0.23
CLSTN3-214ENST00000542663 SCYL1Q96KG9 808 aa16.51■□□□□ 0.23
CLSTN3-214ENST00000542663 PWWP2AQ96N64 755 aa16.51■□□□□ 0.23
CLSTN3-214ENST00000542663 ALPK1Q96QP1 1244 aa16.51■□□□□ 0.23
CLSTN3-214ENST00000542663 ADAP2Q9NPF8 381 aa16.51■□□□□ 0.23
CLSTN3-214ENST00000542663 PRTFDC1Q9NRG1 225 aa16.51■□□□□ 0.23
CLSTN3-214ENST00000542663 NSD1Q96L73 2696 aaPredicted RBP16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 A0A0G2JN53 185 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 WWP2O00308 870 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 AQP7O14520 342 aa16.5■□□□□ 0.23
CLSTN3-214ENST00000542663 ZNF354AO60765 605 aaPredicted RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms