RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 CHST10O43529 356 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 SEC22BO75396 215 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 JUNP05412 331 aaKnown RBP16.19■□□□□ 0.18
LIG1-204ENST00000542460 KLK1P06870 262 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 ATXN8OSP0DMR3 200 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 TCN2P20062 427 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 OLR1P78380 273 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 MAT1AQ00266 395 aaKnown RBP16.19■□□□□ 0.18
LIG1-204ENST00000542460 RUNX2Q13950 521 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 NR6A1Q15406 480 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 MLIPQ5VWP3 458 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 MRPL14Q6P1L8 145 aaKnown RBP16.19■□□□□ 0.18
LIG1-204ENST00000542460 FAM198BQ6UWH4 519 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 COX15Q7KZN9 410 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 WDR75Q8IWA0 830 aaKnown RBP16.19■□□□□ 0.18
LIG1-204ENST00000542460 ZNF248Q8NDW4 579 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 OR51Q1Q8NH59 317 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 SNIP1Q8TAD8 396 aaKnown RBP16.19■□□□□ 0.18
LIG1-204ENST00000542460 CT55Q8WUE5 264 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 PPP3R2Q96LZ3 170 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 C3orf30Q96M34 536 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 SLC26A1Q9H2B4 701 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 LRTM1Q9HBL6 345 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 MKKSQ9NPJ1 570 aaPredicted RBP16.19■□□□□ 0.18
LIG1-204ENST00000542460 C1orf109Q9NX04 203 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 SIRT5Q9NXA8 310 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 HCN3Q9P1Z3 774 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 ZNF282Q9UDV7 671 aaPredicted RBP16.19■□□□□ 0.18
LIG1-204ENST00000542460 IGLV3-12A0A075B6K2 115 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 A0A0A6YYD5 115 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 ATP6AP2A0A1C7CYW4 349 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 ARHGAP10A1A4S6 786 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 C21orf140B9A014 251 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 LSM1O15116 133 aaKnown RBP16.19■□□□□ 0.18
LIG1-204ENST00000542460 TLX3O43711 291 aaPredicted RBP16.19■□□□□ 0.18
LIG1-204ENST00000542460 EDF1O60869 148 aaKnown RBP16.19■□□□□ 0.18
LIG1-204ENST00000542460 DNAJB6O75190 326 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 EEDO75530 441 aaKnown RBP16.19■□□□□ 0.18
LIG1-204ENST00000542460 ATP6AP2O75787 350 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 CAPNS1P04632 268 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 RAB40ALP0C0E4 278 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 IL10P22301 178 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 TPP2P29144 1249 aaPredicted RBP16.19■□□□□ 0.18
LIG1-204ENST00000542460 OCA2Q04671 838 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 SLAMF1Q13291 335 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 TGIF1Q15583 401 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 SYT16Q17RD7 645 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 CCNYL2Q5T2Q4 361 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 GALNT18Q6P9A2 607 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 CYP20A1Q6UW02 462 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 CA13Q8N1Q1 262 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 C11orf24Q96F05 449 aaPredicted RBP16.19■□□□□ 0.18
LIG1-204ENST00000542460 TGIF2Q9GZN2 237 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 MEAF6Q9HAF1 191 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 LYRM4Q9HD34 91 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 CROTQ9UKG9 612 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 DAPP1Q9UN19 280 aa16.19■□□□□ 0.18
LIG1-204ENST00000542460 SDK2Q58EX2 2172 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 LOC101059948A0A1B0GTJ6 334 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 VPS4BO75351 444 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 MYO1DO94832 1006 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 TGDSO95455 350 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 RNH1P13489 461 aaKnown RBP16.18■□□□□ 0.18
LIG1-204ENST00000542460 DLSTP36957 453 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 XCR1P46094 333 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 GYS2P54840 703 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 LIM2P55344 173 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 RPS15P62841 145 aaKnown RBP16.18■□□□□ 0.18
LIG1-204ENST00000542460 KIAA0040Q15053 153 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 NCF4Q15080 339 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 NKG7Q16617 165 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 GALNTL6Q49A17 601 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 ATP6AP1LQ52LC2 224 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 KCNE4Q8WWG9 221 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 KIAA1143Q96AT1 154 aaPredicted RBP16.18■□□□□ 0.18
LIG1-204ENST00000542460 TUBGCP3Q96CW5 907 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 PPP1R36Q96LQ0 422 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 OR1F2PQ96R84 312 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 GPR87Q9BY21 358 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 WDR54Q9H977 334 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 LYARQ9NX58 379 aaKnown RBP16.18■□□□□ 0.18
LIG1-204ENST00000542460 MS4A12Q9NXJ0 267 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 CTSFQ9UBX1 484 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 MCM8Q9UJA3 840 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 KCND3Q9UK17 655 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 NXT1Q9UKK6 140 aaKnown RBP16.18■□□□□ 0.18
LIG1-204ENST00000542460 FARSAQ9Y285 508 aaKnown RBP16.18■□□□□ 0.18
LIG1-204ENST00000542460 TMED5Q9Y3A6 229 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 USH1CQ9Y6N9 552 aa16.18■□□□□ 0.18
LIG1-204ENST00000542460 VSTM2BA6NLU5 285 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 PSMD12O00232 456 aaPredicted RBP16.17■□□□□ 0.18
LIG1-204ENST00000542460 ZNF195O14628 629 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 TERTO14746 1132 aaKnown RBP16.17■□□□□ 0.18
LIG1-204ENST00000542460 POLR3GO15318 223 aaPredicted RBP16.17■□□□□ 0.18
LIG1-204ENST00000542460 PEX11AO75192 247 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 GBAP04062 536 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 VIMP08670 466 aaKnown RBP16.17■□□□□ 0.18
LIG1-204ENST00000542460 FAM58BPP0C7Q3 252 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 MAPK12P53778 367 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 RAB38P57729 211 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms