RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 OR12D1P0DN82 309 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 BCKDHAP12694 445 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 ZNF20P17024 532 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 KCTD21Q4G0X4 260 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 KDELC1Q6UW63 502 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 MFSD6LQ8IWD5 586 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 VN1R2Q8NFZ6 395 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 BBS10Q8TAM1 723 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 TMEM234Q8WY98 164 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 MCHR1Q99705 422 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 GORASP1Q9BQQ3 440 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 MARCH7Q9H992 704 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 COMMD3-BMI1R4GMX3 469 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 TRMUO75648 421 aaKnown RBP13.56□□□□□ -0.24
USP3-204ENST00000540797 RPS3P23396 243 aaKnown RBP eCLIP13.56□□□□□ -0.24
USP3-204ENST00000540797 MRPS21P82921 87 aaKnown RBP13.56□□□□□ -0.24
USP3-204ENST00000540797 CRTC2Q53ET0 693 aaPredicted RBP13.56□□□□□ -0.24
USP3-204ENST00000540797 TANGO2Q6ICL3 276 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 ZNF550Q7Z398 422 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 ZNF676Q8N7Q3 588 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 GPR26Q8NDV2 337 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 ACVR1CQ8NER5 493 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 ALPK1Q96QP1 1244 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 ZNF717Q9BY31 904 aaPredicted RBP13.56□□□□□ -0.24
USP3-204ENST00000540797 DSN1Q9H410 356 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 OAZ3Q9UMX2 235 aa13.56□□□□□ -0.24
USP3-204ENST00000540797 A0A075B6Q4 140 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 RTCAO00442 366 aaKnown RBP13.55□□□□□ -0.24
USP3-204ENST00000540797 SCO2O43819 266 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 AIREO43918 545 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 PLOD3O60568 738 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 TIMP2P16035 220 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 EGFLAMQ63HQ2 1017 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 OR8K5Q8NH50 307 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 C11orf24Q96F05 449 aaPredicted RBP13.55□□□□□ -0.24
USP3-204ENST00000540797 ADAD1Q96M93 576 aaKnown RBP13.55□□□□□ -0.24
USP3-204ENST00000540797 SLC12A9Q9BXP2 914 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 DDX60Q8IY21 1712 aaKnown RBP13.55□□□□□ -0.24
USP3-204ENST00000540797 HBQ1P09105 142 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 IFI30P13284 250 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 CKMT2P17540 419 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 CD6P30203 668 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 FMO3P31513 532 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 MGAT3Q09327 533 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 NNATQ16517 81 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 LIPIQ6XZB0 460 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 SATL1Q86VE3 508 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 P2RY8Q86VZ1 359 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 BIRC7Q96CA5 298 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 MRPL38Q96DV4 380 aaKnown RBP13.55□□□□□ -0.24
USP3-204ENST00000540797 HSPA12BQ96MM6 686 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 NFS1Q9Y697 457 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 PSIP1O75475 530 aaKnown RBP13.55□□□□□ -0.24
USP3-204ENST00000540797 DIRAS1O95057 198 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 SLC16A8O95907 504 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 DRD2P14416 443 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 IL1RNP18510 177 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 MXD1Q05195 221 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 GRB7Q14451 532 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 CCDC92Q53HC0 331 aaPredicted RBP13.55□□□□□ -0.24
USP3-204ENST00000540797 KLHL26Q53HC5 615 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 ANKRD54Q6NXT1 300 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 HSDL2Q6YN16 418 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 KCTD8Q6ZWB6 473 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 KLHL36Q8N4N3 616 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 AQP11Q8NBQ7 271 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 OR5T3Q8NGG3 340 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 OR5AR1Q8NGP9 310 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 ADAMTS18Q8TE60 1221 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 ZNF317Q96PQ6 595 aaPredicted RBP13.55□□□□□ -0.24
USP3-204ENST00000540797 C1QTNF1Q9BXJ1 281 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 AMBNQ9NP70 447 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 MARK1Q9P0L2 795 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 EFCAB9A8MZ26 197 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 SYNGR4O95473 234 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 HLA-FP30511 346 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 PPP1R8Q12972 351 aaKnown RBP13.55□□□□□ -0.24
USP3-204ENST00000540797 PAQR9Q6ZVX9 377 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 ANKRD33Q7Z3H0 272 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 ARHGAP12Q8IWW6 846 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 RASGEF1AQ8N9B8 481 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 DGCR14Q96DF8 476 aaKnown RBP13.55□□□□□ -0.24
USP3-204ENST00000540797 PEX11GQ96HA9 241 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 DIRAS2Q96HU8 199 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 CMKLR1Q99788 373 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 LGR4Q9BXB1 951 aa13.55□□□□□ -0.24
USP3-204ENST00000540797 SOX1O00570 391 aaPredicted RBP13.54□□□□□ -0.24
USP3-204ENST00000540797 SDHDO14521 159 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 KLHL18O94889 574 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 RLN1P04808 185 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 PORP16435 677 aaPredicted RBP13.54□□□□□ -0.24
USP3-204ENST00000540797 TGFBR2P37173 567 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 GDI2P50395 445 aaKnown RBP13.54□□□□□ -0.24
USP3-204ENST00000540797 GBX1Q14549 363 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 SHHQ15465 462 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 DEFB110Q30KQ9 67 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 KLHDC8AQ8IYD2 350 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 OR5L2Q8NGL0 311 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 DTD2Q96FN9 168 aa13.54□□□□□ -0.24
USP3-204ENST00000540797 GRHPRQ9UBQ7 328 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms