RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 RPL9P32969 192 aaKnown RBP2.32□□□□□ -2.04
CD44-238ENST00000534296 SERPINB6P35237 376 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 GALK2Q01415 458 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 ARHGAP1Q07960 439 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 GRB14Q14449 540 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 TRADDQ15628 312 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 DUSP5Q16690 384 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 MS4A18Q3C1V0 323 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 LRRC37A5PQ49AS3 106 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 LYPLAL1Q5VWZ2 237 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 PM20D1Q6GTS8 502 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 ZNF774Q6NX45 483 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 PLBD1Q6P4A8 553 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 DHRS11Q6UWP2 260 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 TRMT11Q7Z4G4 463 aaKnown RBP2.32□□□□□ -2.04
CD44-238ENST00000534296 TMEM126BQ8IUX1 230 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 KLHDC8AQ8IYD2 350 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 APCDD1Q8J025 514 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 SLC39A11Q8N1S5 342 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 TMEM99Q8N816 258 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 PRSS33Q8NF86 280 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 FIBINQ8TAL6 211 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 ATP6V0A1Q93050 837 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 CCDC47Q96A33 483 aaKnown RBP2.32□□□□□ -2.04
CD44-238ENST00000534296 NXPE2Q96DL1 559 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 EEF2KMTQ96G04 330 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 RBM41Q96IZ5 413 aaKnown RBP2.32□□□□□ -2.04
CD44-238ENST00000534296 ANKRD27Q96NW4 1050 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 PCDHB18PQ96TA0 734 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 SOSTQ9BQB4 213 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 ABCG4Q9H172 646 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 MARCH7Q9H992 704 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 RPS10P5Q9NQ39 176 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 COMMD8Q9NX08 183 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 SPG21Q9NZD8 308 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 BAIAP2L1Q9UHR4 511 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 MOSPD1Q9UJG1 213 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 PILRBQ9UKJ0 227 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 TP53TG3Q9ULZ0 132 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 GPR132Q9UNW8 380 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 SNX5Q9Y5X3 404 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 ARID2Q68CP9 1835 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 PFASO15067 1338 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 A0A087WZ39 114 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 MAGEB16A2A368 324 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 A8MXK9 166 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 INPP4BO15327 924 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 SLC16A8O95907 504 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 ADORA3P0DMS8 318 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 P4HA1P13674 534 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 ZNF18P17022 549 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 MARCKSP29966 332 aaPredicted RBP2.31□□□□□ -2.04
CD44-238ENST00000534296 PPP2R1AP30153 589 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 PKLRP30613 574 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 GPR183P32249 361 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 NT5C2P49902 561 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 GMPSP49915 693 aaPredicted RBP2.31□□□□□ -2.04
CD44-238ENST00000534296 NME5P56597 212 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 ERVK-16P61578 105 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 CSNK2BP67870 215 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 GSTO1P78417 241 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 PAX8Q06710 450 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 FCHO2Q0JRZ9 810 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 CNTN1Q12860 1018 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 CEACAM7Q14002 265 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 FAM106AQ4KMX7 169 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 RFTN2Q52LD8 501 aaPredicted RBP2.31□□□□□ -2.04
CD44-238ENST00000534296 TCTEX1D4Q5JR98 221 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 SNRNP48Q6IEG0 339 aaKnown RBP2.31□□□□□ -2.04
CD44-238ENST00000534296 OR4C11Q6IEV9 310 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 C17orf107Q6ZR85 190 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 COX8CQ7Z4L0 72 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 ZFAND4Q86XD8 727 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 CATSPERDQ86XM0 798 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 AQP12AQ8IXF9 295 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 POM121L12Q8N7R1 296 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 AQP11Q8NBQ7 271 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 LEMD2Q8NC56 503 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 ICA1LQ8NDH6 482 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 OR52B6Q8NGF0 335 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 MGARPQ8TDB4 240 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 ST7LQ8TDW4 575 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 ATP8B4Q8TF62 1192 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 CASP10Q92851 521 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 TOMM40LQ969M1 308 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 FOXN4Q96NZ1 517 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 NEDD4LQ96PU5 975 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 ZNF559Q9BR84 538 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 FAM213AQ9BRX8 229 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 MRPL9Q9BYD2 267 aaKnown RBP2.31□□□□□ -2.04
CD44-238ENST00000534296 PUS3Q9BZE2 481 aaKnown RBP2.31□□□□□ -2.04
CD44-238ENST00000534296 SLC39A8Q9C0K1 460 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 EGLN3Q9H6Z9 239 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 S100A14Q9HCY8 104 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 PHPT1Q9NRX4 125 aaPredicted RBP2.31□□□□□ -2.04
CD44-238ENST00000534296 RARRES3Q9UL19 164 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 ERVK-19Q9WJR5 959 aa2.31□□□□□ -2.04
CD44-238ENST00000534296 HBS1LQ9Y450 684 aaKnown RBP2.31□□□□□ -2.04
CD44-238ENST00000534296 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP2.3□□□□□ -2.04
CD44-238ENST00000534296 CCL24O00175 119 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms