RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 LANCL2Q9NS86 450 aa13.67□□□□□ -0.22
CPSF1-206ENST00000531480 INTS9Q9NV88 658 aaKnown RBP13.67□□□□□ -0.22
CPSF1-206ENST00000531480 KCMF1Q9P0J7 381 aa13.67□□□□□ -0.22
CPSF1-206ENST00000531480 TRPC4Q9UBN4 977 aa13.67□□□□□ -0.22
CPSF1-206ENST00000531480 HAO1Q9UJM8 370 aa13.67□□□□□ -0.22
CPSF1-206ENST00000531480 TMEM114B3SHH9 223 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 PCDH17O14917 1159 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 POLR3GO15318 223 aaPredicted RBP13.66□□□□□ -0.22
CPSF1-206ENST00000531480 CHST10O43529 356 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 FURINP09958 794 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 HIST1H1TP22492 207 aaPredicted RBP13.66□□□□□ -0.22
CPSF1-206ENST00000531480 GRK2P25098 689 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 ATP5A1P25705 553 aaKnown RBP13.66□□□□□ -0.22
CPSF1-206ENST00000531480 BSGP35613 385 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 FOLR3P41439 243 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 XCR1P46094 333 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 HTR6P50406 440 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 EFNA3P52797 238 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 BTN3A2P78410 334 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 MAT1AQ00266 395 aaKnown RBP13.66□□□□□ -0.22
CPSF1-206ENST00000531480 KLC1Q07866 573 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 TBL3Q12788 808 aaKnown RBP13.66□□□□□ -0.22
CPSF1-206ENST00000531480 CDC20Q12834 499 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 DDX39BQ13838 428 aaKnown RBP13.66□□□□□ -0.22
CPSF1-206ENST00000531480 RUNX2Q13950 521 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 ABRAXAS2Q15018 415 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 VWA2Q5GFL6 755 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 HHATQ5VTY9 493 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 KANK2Q63ZY3 851 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 TTC19Q6DKK2 380 aaPredicted RBP13.66□□□□□ -0.22
CPSF1-206ENST00000531480 OR4C11Q6IEV9 310 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 MRM1Q6IN84 353 aaKnown RBP13.66□□□□□ -0.22
CPSF1-206ENST00000531480 LAPTM4BQ86VI4 370 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 CA13Q8N1Q1 262 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 METTL4Q8N3J2 472 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 ZSCAN1Q8NBB4 408 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 SELENOMQ8WWX9 145 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 MIEF2Q96C03 454 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 FAR2Q96K12 515 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 CENPKQ9BS16 269 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 EML4Q9HC35 981 aaKnown RBP13.66□□□□□ -0.22
CPSF1-206ENST00000531480 LYRM4Q9HD34 91 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 SEMA3GQ9NS98 782 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 SIRT5Q9NXA8 310 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 ADAM29Q9UKF5 820 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 DAPP1Q9UN19 280 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 PTRH2Q9Y3E5 179 aaKnown RBP13.66□□□□□ -0.22
CPSF1-206ENST00000531480 CCL27Q9Y4X3 112 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 TIMM22Q9Y584 194 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 ATMQ13315 3056 aa13.66□□□□□ -0.22
CPSF1-206ENST00000531480 A0A0A6YYD5 115 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 ZNF860A6NHJ4 632 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 CYR61O00622 381 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 AZIN1O14977 448 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 NKX2-8O15522 239 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 NEFHP12036 1026 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 RNH1P13489 461 aaKnown RBP13.65□□□□□ -0.22
CPSF1-206ENST00000531480 MMP11P24347 488 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 HMOX2P30519 316 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 FOXL2P58012 376 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 CHI3L2Q15782 390 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 FAM69BQ5VUD6 431 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 ACOT4Q8N9L9 421 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 RAB3IL1Q8TBN0 382 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 ADAMTS18Q8TE60 1221 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 TBC1D20Q96BZ9 403 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 MTFMTQ96DP5 389 aaKnown RBP13.65□□□□□ -0.22
CPSF1-206ENST00000531480 IP6K3Q96PC2 410 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 ACPTQ9BZG2 426 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 C20orf27Q9GZN8 174 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 HCN3Q9P1Z3 774 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 DNAJC15Q9Y5T4 150 aa13.65□□□□□ -0.22
CPSF1-206ENST00000531480 SCN2AQ99250 2005 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 A0A0G2JN53 185 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 IDSB3KWA1 339 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 RTCAO00442 366 aaKnown RBP13.64□□□□□ -0.23
CPSF1-206ENST00000531480 KLF11O14901 512 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 B3GALT2O43825 422 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 IGHEP01854 428 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 FHP07954 510 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 PRPH2P23942 346 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 CERS1P27544 350 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 LIM2P55344 173 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 RAB38P57729 211 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 ABCE1P61221 599 aaKnown RBP13.64□□□□□ -0.23
CPSF1-206ENST00000531480 RHAGQ02094 409 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 AP5B1Q2VPB7 878 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 TMEM205Q6UW68 189 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 PPP1R32Q7Z5V6 425 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 CLYBLQ8N0X4 340 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 ANKRD42Q8N9B4 389 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 PLPP5Q8NEB5 264 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 CHTF18Q8WVB6 975 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 THAP4Q8WY91 577 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 METTL2AQ96IZ6 378 aaKnown RBP13.64□□□□□ -0.23
CPSF1-206ENST00000531480 CATSPER2Q96P56 530 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 SORT1Q99523 831 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 VN1R1Q9GZP7 353 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 TUBB1Q9H4B7 451 aa13.64□□□□□ -0.23
CPSF1-206ENST00000531480 SOX17Q9H6I2 414 aaPredicted RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms