RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 TMIGD1Q6UXZ0 262 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 CYP4Z2PQ8N1L4 340 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 TMEM156Q8N614 296 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 ANKRD49Q8WVL7 239 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 RHBDF1Q96CC6 855 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 C14orf79Q96F83 325 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 VMP1Q96GC9 406 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 FAR2Q96K12 515 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 QRFPRQ96P65 431 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 EGFL8Q99944 293 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 MCMBPQ9BTE3 642 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 PITHD1Q9GZP4 211 aaPredicted RBP10.58□□□□□ -0.72
VPS28-214ENST00000531032 ENKD1Q9H0I2 346 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 NT5DC2Q9H857 520 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 POPDC3Q9HBV1 291 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 PLSCR2Q9NRY7 297 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 MOCS1Q9NZB8 636 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 PYCARDQ9ULZ3 195 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 PPT2Q9UMR5 302 aa10.58□□□□□ -0.72
VPS28-214ENST00000531032 A0A088AWK7 358 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 A0A0G2JN53 185 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 SYNDIG1LA6NDD5 238 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 E7ESA3 106 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 CLDN4O14493 209 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 ERI3O43414 337 aaKnown RBP10.57□□□□□ -0.72
VPS28-214ENST00000531032 HS6ST1O60243 411 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 CLEC3AO75596 197 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 WISP3O95389 354 aaPredicted RBP10.57□□□□□ -0.72
VPS28-214ENST00000531032 TBX6O95947 436 aaPredicted RBP10.57□□□□□ -0.72
VPS28-214ENST00000531032 ZNF10P21506 573 aaPredicted RBP10.57□□□□□ -0.72
VPS28-214ENST00000531032 PPP2R1BP30154 601 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 RFC3P40938 356 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 GDF5P43026 501 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 HNRNPFP52597 415 aaKnown RBP10.57□□□□□ -0.72
VPS28-214ENST00000531032 SLBPQ14493 270 aaKnown RBP eCLIP10.57□□□□□ -0.72
VPS28-214ENST00000531032 FASTKD3Q14CZ7 662 aaKnown RBP10.57□□□□□ -0.72
VPS28-214ENST00000531032 C18orf21Q32NC0 220 aaPredicted RBP10.57□□□□□ -0.72
VPS28-214ENST00000531032 FRA10AC1Q70Z53 315 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 MDGA2Q7Z553 956 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 CD163Q86VB7 1156 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 ANKMY2Q8IV38 441 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 CEP97Q8IW35 865 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 ZNF595Q8IYB9 648 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 KRT78Q8N1N4 520 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 MARVELD2Q8N4S9 558 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 TMEM52Q8NDY8 209 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 CA5BP1Q8WTZ4 195 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 NCLNQ969V3 563 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 SDCCAG3Q96C92 435 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 DERL2Q9GZP9 239 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 RHOJQ9H4E5 214 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 EHD1Q9H4M9 534 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 ADAP2Q9NPF8 381 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 PRTFDC1Q9NRG1 225 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 PNO1Q9NRX1 252 aaKnown RBP10.57□□□□□ -0.72
VPS28-214ENST00000531032 GPRC5BQ9NZH0 403 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 CTNNAL1Q9UBT7 734 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 FBXW2Q9UKT8 454 aa10.57□□□□□ -0.72
VPS28-214ENST00000531032 YARS2Q9Y2Z4 477 aaKnown RBP10.57□□□□□ -0.72
VPS28-214ENST00000531032 HIVEP1P15822 2718 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 TMEM200CA6NKL6 621 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 CCDC188H7C350 402 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 CYR61O00622 381 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 B3GALT2O43825 422 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 PRKNO60260 465 aaPredicted RBP10.56□□□□□ -0.72
VPS28-214ENST00000531032 H2AFYO75367 372 aaKnown RBP10.56□□□□□ -0.72
VPS28-214ENST00000531032 ZFAND5O76080 213 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 TUBB4AP04350 444 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 TPOP07202 933 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 CAPN3P20807 821 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 HPDP32754 393 aaPredicted RBP10.56□□□□□ -0.72
VPS28-214ENST00000531032 GGT5P36269 586 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 SSR4P51571 173 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 PLA2G16P53816 162 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 KRTAP10-9P60411 292 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 GPR85P60893 370 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 ILF2Q12905 390 aaKnown RBP10.56□□□□□ -0.72
VPS28-214ENST00000531032 PDIA2Q13087 525 aaKnown RBP10.56□□□□□ -0.72
VPS28-214ENST00000531032 SLC13A2Q13183 592 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 CBLBQ13191 982 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 TGFBIQ15582 683 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 ELAVL1Q15717 326 aaKnown RBP10.56□□□□□ -0.72
VPS28-214ENST00000531032 ARHGAP11AQ6P4F7 1023 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 VN1R5Q7Z5H4 357 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 CREG2Q8IUH2 290 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 GPALPP1Q8IXQ4 340 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 FAM47BQ8NA70 645 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 PSD4Q8NDX1 1056 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 FBXO36Q8NEA4 188 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 OR2L5Q8NG80 312 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 CCT6BQ92526 530 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 VPS39Q96JC1 886 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 SERINC2Q96SA4 455 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 CSF3RQ99062 836 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 CCDC77Q9BR77 488 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 TMEM79Q9BSE2 394 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 CAPS2Q9BXY5 557 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 TRIM31Q9BZY9 425 aa10.56□□□□□ -0.72
VPS28-214ENST00000531032 REXO4Q9GZR2 422 aaKnown RBP10.56□□□□□ -0.72
VPS28-214ENST00000531032 TIMMDC1Q9NPL8 285 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms