RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 PDE7AQ13946 482 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 LRIF1Q5T3J3 769 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 NANOGP8Q6NSW7 305 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 GUSBP11Q6P575 273 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 RNF44Q7L0R7 432 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 ZNF761Q86XN6 746 aaPredicted RBP20.16■□□□□ 0.82
VPS28-212ENST00000530836 OR7A2PQ8NGA2 310 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 RERGQ96A58 199 aaPredicted RBP20.16■□□□□ 0.82
VPS28-212ENST00000530836 CCDC124Q96CT7 223 aaKnown RBP20.16■□□□□ 0.82
VPS28-212ENST00000530836 ZNF764Q96H86 408 aaPredicted RBP20.16■□□□□ 0.82
VPS28-212ENST00000530836 SLC39A3Q9BRY0 314 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 DUSP26Q9BV47 211 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 NANOGQ9H9S0 305 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 DCHS1Q96JQ0 3298 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 PRSS51A0A1B0GVH4 220 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 TBX19O60806 448 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 HSD17B1P14061 328 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 GPR3P46089 330 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 EEFSECP57772 596 aaKnown RBP20.16■□□□□ 0.82
VPS28-212ENST00000530836 PHC1P78364 1004 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 ILKQ13418 452 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 TRIM25Q14258 630 aaKnown RBP20.16■□□□□ 0.82
VPS28-212ENST00000530836 CAPRIN1Q14444 709 aaKnown RBP20.16■□□□□ 0.82
VPS28-212ENST00000530836 ABHD17CQ6PCB6 329 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 UBE3DQ7Z6J8 389 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 ZCCHC7Q8N3Z6 543 aaKnown RBP20.16■□□□□ 0.82
VPS28-212ENST00000530836 DNAJB14Q8TBM8 379 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 NUDT8Q8WV74 236 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 NAT6Q93015 286 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 GAL3ST3Q96A11 431 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 TMEM125Q96AQ2 219 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 C1GALT1Q9NS00 363 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 LRIT1Q9P2V4 623 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 EPHA6Q9UF33 1036 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 BTNL2Q9UIR0 455 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 PCDHGA1Q9Y5H4 931 aa20.16■□□□□ 0.82
VPS28-212ENST00000530836 PRORSD1PA6NEY8 169 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 ZSCAN9O15535 394 aaPredicted RBP20.15■□□□□ 0.82
VPS28-212ENST00000530836 ERI3O43414 337 aaKnown RBP20.15■□□□□ 0.82
VPS28-212ENST00000530836 ENTPD5O75356 428 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 STAMBPO95630 424 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 GBAP04062 536 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 GP1BAP07359 652 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 FURINP09958 794 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 HOXB3P14651 431 aaPredicted RBP20.15■□□□□ 0.82
VPS28-212ENST00000530836 PLA2G16P53816 162 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 KLC1Q07866 573 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 TOR1AIP1Q5JTV8 583 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 OR4F3Q6IEY1 312 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 ZNF438Q7Z4V0 828 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 VN1R4Q7Z5H5 301 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 SLCO6A1Q86UG4 719 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 CARFQ8N187 725 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 IFI44Q8TCB0 444 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 PPCDCQ96CD2 204 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 ANKRD27Q96NW4 1050 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 GBP5Q96PP8 586 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 CD180Q99467 661 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 C17orf62Q9BQA9 187 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 MUC13Q9H3R2 512 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 DCLRE1BQ9H816 532 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 LHX9Q9NQ69 397 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 SERHLQ9NQF3 203 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 MIEF1Q9NQG6 463 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 SLAMF8Q9P0V8 285 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 RNF215Q9Y6U7 377 aa20.15■□□□□ 0.82
VPS28-212ENST00000530836 GOLGA4Q13439 2230 aaKnown RBP20.15■□□□□ 0.82
VPS28-212ENST00000530836 A0A0A6YYD5 115 aa20.14■□□□□ 0.81
VPS28-212ENST00000530836 RNASET2O00584 256 aaKnown RBP20.14■□□□□ 0.81
VPS28-212ENST00000530836 NME4O00746 187 aa20.14■□□□□ 0.81
VPS28-212ENST00000530836 RFXANKO14593 260 aa20.14■□□□□ 0.81
VPS28-212ENST00000530836 CTSVO60911 334 aa20.14■□□□□ 0.81
VPS28-212ENST00000530836 KLHL18O94889 574 aa20.14■□□□□ 0.81
VPS28-212ENST00000530836 DKK1O94907 266 aa20.14■□□□□ 0.81
VPS28-212ENST00000530836 FTH1P19P0C7X4 201 aa20.14■□□□□ 0.81
VPS28-212ENST00000530836 PIM1P11309 404 aaPredicted RBP20.14■□□□□ 0.81
VPS28-212ENST00000530836 DDCP20711 480 aa20.14■□□□□ 0.81
VPS28-212ENST00000530836 ZNF10P21506 573 aaPredicted RBP20.14■□□□□ 0.81
VPS28-212ENST00000530836 CDH3P22223 829 aa20.14■□□□□ 0.81
VPS28-212ENST00000530836 HIST1H1TP22492 207 aaPredicted RBP20.14■□□□□ 0.81
VPS28-212ENST00000530836 LSSP48449 732 aa20.14■□□□□ 0.81
VPS28-212ENST00000530836 BNIP2Q12982 314 aa20.14■□□□□ 0.81
VPS28-212ENST00000530836 SLC9A5Q14940 896 aa20.14■□□□□ 0.81
VPS28-212ENST00000530836 NR1D2Q14995 579 aa20.14■□□□□ 0.81
VPS28-212ENST00000530836 ZC3H12BQ5HYM0 836 aaKnown RBP20.14■□□□□ 0.81
VPS28-212ENST00000530836 EFCAB3Q8N7B9 438 aa20.14■□□□□ 0.81
VPS28-212ENST00000530836 TM4SF18Q96CE8 201 aa20.14■□□□□ 0.81
VPS28-212ENST00000530836 ZDHHC12Q96GR4 267 aa20.14■□□□□ 0.81
VPS28-212ENST00000530836 CMTM6Q9NX76 183 aa20.14■□□□□ 0.81
VPS28-212ENST00000530836 SH3BP4Q9P0V3 963 aa20.14■□□□□ 0.81
VPS28-212ENST00000530836 A0A0J9YVX5 310 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 RTCAO00442 366 aaKnown RBP20.13■□□□□ 0.81
VPS28-212ENST00000530836 SCN2BO60939 215 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 FKBP6O75344 327 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 SCELO95171 688 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 IL3P08700 152 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 LAMP1P11279 417 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 DRD2P14416 443 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 PNLIPP16233 465 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 WNT3P56703 355 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms