RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ZSCAN9O15535 394 aaPredicted RBP7.05□□□□□ -1.28
CD44-228ENST00000528455 PDYNP01213 254 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 RPLP0P05388 317 aaKnown RBP7.05□□□□□ -1.28
CD44-228ENST00000528455 LINC00032P0C843 101 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 ST6GAL1P15907 406 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 NELFEP18615 380 aaKnown RBP7.05□□□□□ -1.28
CD44-228ENST00000528455 MAGP20916 626 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 PPM1FP49593 454 aaPredicted RBP7.05□□□□□ -1.28
CD44-228ENST00000528455 NEK2P51955 445 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 ARFIP2P53365 341 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 AQP5P55064 265 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 PHEXP78562 749 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 REEP5Q00765 189 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 BTKQ06187 659 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 ZFP36L1Q07352 338 aaKnown RBP7.05□□□□□ -1.28
CD44-228ENST00000528455 CSTF3Q12996 717 aaKnown RBP7.05□□□□□ -1.28
CD44-228ENST00000528455 ZIC1Q15915 447 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 TMEM35AQ53FP2 167 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 TCTE1Q5JU00 501 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 GKAP1Q5VSY0 366 aaPredicted RBP7.05□□□□□ -1.28
CD44-228ENST00000528455 CGB2Q6NT52 195 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 FAM92BQ6ZTR7 304 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 SPATA21Q7Z572 469 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 PRSS42Q7Z5A4 293 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 SPATA19Q7Z5L4 167 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 ADCK2Q7Z695 626 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 CDH24Q86UP0 819 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 GALNT15Q8N3T1 639 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 D2HGDHQ8N465 521 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 ZNF655Q8N720 491 aaPredicted RBP7.05□□□□□ -1.28
CD44-228ENST00000528455 ANKRD53Q8N9V6 530 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 CAMKVQ8NCB2 501 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 ZNF740Q8NDX6 193 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 SRFBP1Q8NEF9 429 aaKnown RBP7.05□□□□□ -1.28
CD44-228ENST00000528455 HUS1BQ8NHY5 278 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 NT5CQ8TCD5 201 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 AGR3Q8TD06 166 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 BCAS4Q8TDM0 211 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 CREB3L4Q8TEY5 395 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 ZNF473Q8WTR7 871 aaKnown RBP7.05□□□□□ -1.28
CD44-228ENST00000528455 TWIST2Q8WVJ9 160 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 SLC13A3Q8WWT9 602 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 C19orf60Q96EN9 201 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 SLC41A2Q96JW4 573 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 PPP3R2Q96LZ3 170 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 ZNF285Q96NJ3 590 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 TGM7Q96PF1 710 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 KCNA7Q96RP8 456 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 SERPINI1Q99574 410 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 ZFYVE21Q9BQ24 234 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 CCDC28BQ9BUN5 200 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 NUF2Q9BZD4 464 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 SERTAD3Q9UJW9 196 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 PLCL2Q9UPR0 1127 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 U3KQE9 123 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 WDFY3Q8IZQ1 3526 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 IGHV5-10-1A0A0J9YXX1 117 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 FEZF1A0PJY2 475 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 H0YGG7 62 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 RGS13O14921 159 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 HAT1O14929 419 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 PIP5K1BO14986 540 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 KIF1CO43896 1103 aaKnown RBP7.04□□□□□ -1.28
CD44-228ENST00000528455 DIAPH2O60879 1101 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 CTSVO60911 334 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 SEC22BO75396 215 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 RASSF9O75901 435 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 RSL1D1O76021 490 aaKnown RBP7.04□□□□□ -1.28
CD44-228ENST00000528455 SMIM10L1P0DMW3 83 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 PCNAP12004 261 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 PVRP15151 417 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 LBPP18428 481 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 ADSLP30566 484 aaPredicted RBP7.04□□□□□ -1.28
CD44-228ENST00000528455 TSFMP43897 325 aaKnown RBP7.04□□□□□ -1.28
CD44-228ENST00000528455 GABRA4P48169 554 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 ACADVLP49748 655 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 GFERP55789 205 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 ARF3P61204 181 aaPredicted RBP7.04□□□□□ -1.28
CD44-228ENST00000528455 STXBP1P61764 594 aaKnown RBP7.04□□□□□ -1.28
CD44-228ENST00000528455 PPP1CAP62136 330 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 MEF2AQ02078 507 aaPredicted RBP7.04□□□□□ -1.28
CD44-228ENST00000528455 EMX2Q04743 252 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 MAD2L1Q13257 205 aaPredicted RBP7.04□□□□□ -1.28
CD44-228ENST00000528455 SPIDRQ14159 915 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 KIAA0040Q15053 153 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 FAM214AQ32MH5 1076 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 ADPRMQ3LIE5 342 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 CCDC157Q569K6 752 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 SGO1Q5FBB7 561 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 XKR7Q5GH72 579 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 C6orf136Q5SQH8 315 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 KHDRBS2Q5VWX1 349 aaKnown RBP7.04□□□□□ -1.28
CD44-228ENST00000528455 FBXW10Q5XX13 1052 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 OGFOD2Q6N063 350 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 NIPAL1Q6NVV3 410 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 GALNT18Q6P9A2 607 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 RNF44Q7L0R7 432 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 NLRC3Q7RTR2 1065 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 TMPRSS7Q7RTY8 843 aa7.04□□□□□ -1.28
CD44-228ENST00000528455 TRIM73Q86UV7 250 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms