RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 NLRC3Q7RTR2 1065 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 DDX53Q86TM3 631 aaKnown RBP5.59□□□□□ -1.51
CD44-225ENST00000527326 TRIM69Q86WT6 500 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 NAXDQ8IW45 347 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 PDZD9Q8IXQ8 264 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 NIM1KQ8IY84 436 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 SPAG16Q8N0X2 631 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 ABRAQ8N0Z2 381 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 TMEM132CQ8N3T6 1108 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 NANOGP1Q8N7R0 232 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 TRPV1Q8NER1 839 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 OR6X1Q8NH79 312 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 HMGCLL1Q8TB92 370 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 CNIH3Q8TBE1 160 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 IFI44Q8TCB0 444 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 SPPL2BQ8TCT7 592 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 GPR151Q8TDV0 419 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 SCARB1Q8WTV0 552 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 ZNF296Q8WUU4 475 aaPredicted RBP5.59□□□□□ -1.51
CD44-225ENST00000527326 TCTEX1D2Q8WW35 142 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 LPAR1Q92633 364 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 TMEM125Q96AQ2 219 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 PYCR2Q96C36 320 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 MRPS24Q96EL2 167 aaKnown RBP5.59□□□□□ -1.51
CD44-225ENST00000527326 PRMT6Q96LA8 375 aaPredicted RBP5.59□□□□□ -1.51
CD44-225ENST00000527326 MFSD14AQ96MC6 490 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 KREMEN1Q96MU8 473 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 TMEM74Q96NL1 305 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 KCNA7Q96RP8 456 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 CPNE1Q99829 537 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 KCNS3Q9BQ31 491 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 WDR77Q9BQA1 342 aaPredicted RBP5.59□□□□□ -1.51
CD44-225ENST00000527326 RTP3Q9BQQ7 232 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 YIPF4Q9BSR8 244 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 INPP5KQ9BT40 448 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 H2AFJQ9BTM1 129 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 GABARAPL1Q9H0R8 117 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 SDCBP2Q9H190 292 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 XKR8Q9H6D3 395 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 PLAC1Q9HBJ0 212 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 EML4Q9HC35 981 aaKnown RBP5.59□□□□□ -1.51
CD44-225ENST00000527326 GALNT9Q9HCQ5 603 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 MYOZ1Q9NP98 299 aaPredicted RBP5.59□□□□□ -1.51
CD44-225ENST00000527326 PDGFCQ9NRA1 345 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 SLC22A11Q9NSA0 550 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 C14orf105Q9NVL8 296 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 KLHL11Q9NVR0 708 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 SMPD4Q9NXE4 827 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 CCDC167Q9P0B6 97 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 UXTQ9UBK9 157 aaPredicted RBP5.59□□□□□ -1.51
CD44-225ENST00000527326 SPASTQ9UBP0 616 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 METTL1Q9UBP6 276 aaKnown RBP5.59□□□□□ -1.51
CD44-225ENST00000527326 POLLQ9UGP5 575 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 ZDHHC2Q9UIJ5 367 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 POMT2Q9UKY4 750 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 NDRG4Q9ULP0 352 aaKnown RBP5.59□□□□□ -1.51
CD44-225ENST00000527326 CA14Q9ULX7 337 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 GAB2Q9UQC2 676 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 RUVBL1Q9Y265 456 aaKnown RBP5.59□□□□□ -1.51
CD44-225ENST00000527326 TP53TG5Q9Y2B4 290 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 DLGAP4Q9Y2H0 992 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 PLEKHA6Q9Y2H5 1048 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 HIF3AQ9Y2N7 669 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 DHRS7Q9Y394 339 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 POLR3HQ9Y535 204 aaPredicted RBP5.59□□□□□ -1.51
CD44-225ENST00000527326 PCDHB14Q9Y5E9 798 aa5.59□□□□□ -1.51
CD44-225ENST00000527326 QSER1Q2KHR3 1735 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 PRAMEF33A0A0G2JMD5 474 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 SLC12A8A0AV02 714 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 FABP12A6NFH5 140 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 C5orf52A6NGY3 159 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 C3orf70A6NLC5 250 aaPredicted RBP5.58□□□□□ -1.52
CD44-225ENST00000527326 ZNF879B4DU55 563 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 MCIDASD6RGH6 385 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 H0YCG3 227 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 TEX46H3BTG2 121 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 H7C0S8 307 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 TMEM189-UBE2V1I3L0A0 370 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 GNGT2O14610 69 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 CD3EAPO15446 510 aaKnown RBP5.58□□□□□ -1.52
CD44-225ENST00000527326 PAX4O43316 350 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 LYRM1O43325 122 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 TGM5O43548 720 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 PRAMEF10O60809 474 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 ULK1O75385 1050 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 CREG1O75629 220 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 PDE8BO95263 885 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 PRAMEF1O95521 474 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 RAB3DO95716 219 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 GUCA1CO95843 209 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 LGI1O95970 557 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 HEXAP06865 529 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 CHRNGP07510 517 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 APRTP07741 180 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 STSP08842 583 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 TSPAN19P0C672 248 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 SPP1P10451 314 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 CLUP10909 449 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 NDUFB7P17568 137 aa5.58□□□□□ -1.52
CD44-225ENST00000527326 TPH1P17752 444 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms