RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 TCEANCQ8N8B7 351 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 CCDC63Q8NA47 563 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 OR2L2Q8NH16 312 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 ATP8B4Q8TF62 1192 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 C5orf30Q96GV9 206 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 RAB11FIP5Q9BXF6 653 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 TNMDQ9H2S6 317 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 RIMS4Q9H426 269 aaPredicted RBP3.81□□□□□ -1.8
CD44-223ENST00000526553 CYP39A1Q9NYL5 469 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 AKAP7Q9P0M2 348 aaPredicted RBP3.81□□□□□ -1.8
CD44-223ENST00000526553 HMG20BQ9P0W2 317 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 CTSZQ9UBR2 303 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 ZHX2Q9Y6X8 837 aa3.81□□□□□ -1.8
CD44-223ENST00000526553 A0A087WZ39 114 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 A0A0B4J203 849 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 CTDSPLO15194 276 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 TLX2O43763 284 aaPredicted RBP3.8□□□□□ -1.8
CD44-223ENST00000526553 PRAF2O60831 178 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 SEC22BO75396 215 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 SAP30O75446 220 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 AKAP3O75969 853 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 GLCEO94923 617 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 NXPH4O95158 308 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 CAPN2P17655 700 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 NME5P56597 212 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 CLDN17P56750 224 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 BPIFB3P59826 476 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 FOLH1Q04609 750 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 SGCBQ16585 318 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 DUSP5Q16690 384 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 MS4A18Q3C1V0 323 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 TTC27Q6P3X3 843 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 RABEPKQ7Z6M1 372 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 ANKRD46Q86W74 232 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 FAM131BQ86XD5 332 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 MEX3DQ86XN8 651 aaKnown RBP3.8□□□□□ -1.8
CD44-223ENST00000526553 CCDC83Q8IWF9 413 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 CNTN4Q8IWV2 1026 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 PRSS35Q8N3Z0 413 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 CFAP36Q96G28 342 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 CDKN2AIPNLQ96HQ2 116 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 GPN1Q9HCN4 374 aaPredicted RBP3.8□□□□□ -1.8
CD44-223ENST00000526553 PRMT8Q9NR22 394 aaPredicted RBP3.8□□□□□ -1.8
CD44-223ENST00000526553 PNPLA3Q9NST1 481 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 ANO10Q9NW15 660 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 MAD2L2Q9UI95 211 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 DCAF1Q9Y4B6 1507 aa3.8□□□□□ -1.8
CD44-223ENST00000526553 NKX6-3A6NJ46 265 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 SLC9B1P1A6NJY1 282 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 SHISA7A6NL88 538 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 KRTAP9-6A8MVA2 160 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 CACNB4O00305 520 aaPredicted RBP3.79□□□□□ -1.8
CD44-223ENST00000526553 RTCAO00442 366 aaKnown RBP3.79□□□□□ -1.8
CD44-223ENST00000526553 TRAFD1O14545 582 aaPredicted RBP3.79□□□□□ -1.8
CD44-223ENST00000526553 SNAP91O60641 907 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 ATP9AO75110 1047 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 SRSF10O75494 262 aaKnown RBP3.79□□□□□ -1.8
CD44-223ENST00000526553 PIK3R1P27986 724 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 DUTP33316 252 aaKnown RBP3.79□□□□□ -1.8
CD44-223ENST00000526553 CAPGP40121 348 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 STARD6P59095 220 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 AKAP17AQ02040 695 aaKnown RBP3.79□□□□□ -1.8
CD44-223ENST00000526553 IL10RBQ08334 325 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 FAM106AQ4KMX7 169 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 FUT10Q6P4F1 479 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 BTNL8Q6UX41 500 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 GPR141Q7Z602 305 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 PRUNE1Q86TP1 453 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 PHC2Q8IXK0 858 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 KLHDC8AQ8IYD2 350 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 SLC22A15Q8IZD6 547 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 SPAG16Q8N0X2 631 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 NPRL2Q8WTW4 380 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 CHPT1Q8WUD6 406 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 CASP10Q92851 521 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 RBM41Q96IZ5 413 aaKnown RBP3.79□□□□□ -1.8
CD44-223ENST00000526553 C17orf62Q9BQA9 187 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 UBQLN3Q9H347 655 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 TUBB1Q9H4B7 451 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 PHPT1Q9NRX4 125 aaPredicted RBP3.79□□□□□ -1.8
CD44-223ENST00000526553 GPR173Q9NS66 373 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 PDRG1Q9NUG6 133 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 EXOC1Q9NV70 894 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 THAP10Q9P2Z0 257 aaPredicted RBP3.79□□□□□ -1.8
CD44-223ENST00000526553 EPS15L1Q9UBC2 864 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.79□□□□□ -1.8
CD44-223ENST00000526553 ZNF510Q9Y2H8 683 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 AGRNO00468 2067 aa3.79□□□□□ -1.8
CD44-223ENST00000526553 IGHV3-20A0A0C4DH32 117 aa3.78□□□□□ -1.8
CD44-223ENST00000526553 RNF103-CHMP3A0A140T963 221 aa3.78□□□□□ -1.8
CD44-223ENST00000526553 SMIM30A4D0T7 59 aa3.78□□□□□ -1.8
CD44-223ENST00000526553 A8MVM7 634 aa3.78□□□□□ -1.8
CD44-223ENST00000526553 A8MXK9 166 aa3.78□□□□□ -1.8
CD44-223ENST00000526553 C19orf81C9J6K1 198 aa3.78□□□□□ -1.8
CD44-223ENST00000526553 NPIPA3F8WFD2 350 aa3.78□□□□□ -1.8
CD44-223ENST00000526553 RNF103O00237 685 aa3.78□□□□□ -1.8
CD44-223ENST00000526553 PRDM1O75626 825 aa3.78□□□□□ -1.8
CD44-223ENST00000526553 HMOX1P09601 288 aa3.78□□□□□ -1.8
CD44-223ENST00000526553 ANKRD34CP0C6C1 535 aa3.78□□□□□ -1.8
CD44-223ENST00000526553 KRT3P12035 628 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms