RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 SPPL2AQ8TCT8 520 aa3.5□□□□□ -1.85
CD44-215ENST00000525241 SEPT8Q92599 483 aa3.5□□□□□ -1.85
CD44-215ENST00000525241 RFT1Q96AA3 541 aa3.5□□□□□ -1.85
CD44-215ENST00000525241 ZNF597Q96LX8 424 aa3.5□□□□□ -1.85
CD44-215ENST00000525241 JAKMIP1Q96N16 626 aaKnown RBP3.5□□□□□ -1.85
CD44-215ENST00000525241 HNRNPABQ99729 332 aaKnown RBP3.5□□□□□ -1.85
CD44-215ENST00000525241 ZNF577Q9BSK1 485 aa3.5□□□□□ -1.85
CD44-215ENST00000525241 CCM2Q9BSQ5 444 aa3.5□□□□□ -1.85
CD44-215ENST00000525241 UTP14AQ9BVJ6 771 aaKnown RBP3.5□□□□□ -1.85
CD44-215ENST00000525241 IDI2Q9BXS1 227 aa3.5□□□□□ -1.85
CD44-215ENST00000525241 ZNF350Q9GZX5 532 aa3.5□□□□□ -1.85
CD44-215ENST00000525241 MTIF3Q9H2K0 278 aaKnown RBP3.5□□□□□ -1.85
CD44-215ENST00000525241 HEXA-AS1Q9H8Q6 139 aa3.5□□□□□ -1.85
CD44-215ENST00000525241 COPS7BQ9H9Q2 264 aaPredicted RBP3.5□□□□□ -1.85
CD44-215ENST00000525241 UBQLN2Q9UHD9 624 aa3.5□□□□□ -1.85
CD44-215ENST00000525241 LEF1Q9UJU2 399 aaPredicted RBP3.5□□□□□ -1.85
CD44-215ENST00000525241 FBXL5Q9UKA1 691 aa3.5□□□□□ -1.85
CD44-215ENST00000525241 A0A087X0K7 114 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 CCDC162PA2VCL2 907 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 GTPBP10A4D1E9 387 aaKnown RBP3.49□□□□□ -1.85
CD44-215ENST00000525241 SRRM5B3KS81 715 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 K7EQG2 157 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 M0R296 226 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 INPP4BO15327 924 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 ZNF749O43361 778 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 ATP9AO75110 1047 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 CLN5O75503 358 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 RAD51DO75771 328 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 LETM1O95202 739 aaPredicted RBP3.49□□□□□ -1.85
CD44-215ENST00000525241 ZNF10P21506 573 aaPredicted RBP3.49□□□□□ -1.85
CD44-215ENST00000525241 MAGEB1P43366 347 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 PGFP49763 221 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 ATP4BP51164 291 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 CRYBA2P53672 197 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 NDUFV3P56181 108 aaKnown RBP3.49□□□□□ -1.85
CD44-215ENST00000525241 YWHAHQ04917 246 aaPredicted RBP3.49□□□□□ -1.85
CD44-215ENST00000525241 GCKRQ14397 625 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 NFE2L1Q14494 772 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 C3AR1Q16581 482 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 KNOP1Q1ED39 458 aaKnown RBP3.49□□□□□ -1.85
CD44-215ENST00000525241 CCDC158Q5M9N0 1113 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 FAM182AQ5T1J6 154 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 C11orf88Q6PI97 169 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 KCNMB4Q86W47 210 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 RNF130Q86XS8 419 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 KLHDC8AQ8IYD2 350 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 LYG1Q8N1E2 194 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 RNF149Q8NC42 400 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 FIBINQ8TAL6 211 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 TEKT1Q969V4 418 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 FOXN4Q96NZ1 517 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 ATF6BQ99941 703 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 ZNF559Q9BR84 538 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 CCDC28BQ9BUN5 200 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 RAB11FIP5Q9BXF6 653 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 CUEDC2Q9H467 287 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 RPS10P5Q9NQ39 176 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 DNAJC17Q9NVM6 304 aaKnown RBP3.49□□□□□ -1.85
CD44-215ENST00000525241 TMEM161AQ9NX61 479 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 GTSE1Q9NYZ3 720 aa3.49□□□□□ -1.85
CD44-215ENST00000525241 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.49□□□□□ -1.85
CD44-215ENST00000525241 MAGEB16A2A368 324 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 ACOD1A6NK06 481 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 FGF19O95750 216 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 HOXD4P09016 255 aaPredicted RBP3.48□□□□□ -1.85
CD44-215ENST00000525241 C8orf89P0DMQ9 161 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 ADORA3P0DMS8 318 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 IL4RP24394 825 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 ACKR3P25106 362 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 GJB2P29033 226 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 FCGR2BP31994 310 aaPredicted RBP3.48□□□□□ -1.85
CD44-215ENST00000525241 FCGR2CP31995 323 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 ST8SIA6P61647 398 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 FCHO2Q0JRZ9 810 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 TEX35Q5T0J7 233 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 POM121L12Q8N7R1 296 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 GDAP1Q8TB36 358 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 NABP1Q96AH0 204 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 PINK1Q9BXM7 581 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 ACPTQ9BZG2 426 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 VIPAS39Q9H9C1 493 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 MIS18AQ9NYP9 233 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 LIPT1Q9Y234 373 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 ETV7Q9Y603 341 aa3.48□□□□□ -1.85
CD44-215ENST00000525241 A0A0U1RQK1 487 aa3.47□□□□□ -1.85
CD44-215ENST00000525241 ZNF320A2RRD8 509 aa3.47□□□□□ -1.85
CD44-215ENST00000525241 SHISA9B4DS77 424 aa3.47□□□□□ -1.85
CD44-215ENST00000525241 SLC33A1O00400 549 aaPredicted RBP3.47□□□□□ -1.85
CD44-215ENST00000525241 GLCEO94923 617 aa3.47□□□□□ -1.85
CD44-215ENST00000525241 TGDSO95455 350 aa3.47□□□□□ -1.85
CD44-215ENST00000525241 ASIC1P78348 528 aa3.47□□□□□ -1.85
CD44-215ENST00000525241 SRPXP78539 464 aa3.47□□□□□ -1.85
CD44-215ENST00000525241 SLC3A1Q07837 685 aa3.47□□□□□ -1.85
CD44-215ENST00000525241 SIX1Q15475 284 aaPredicted RBP3.47□□□□□ -1.85
CD44-215ENST00000525241 KBTBD12Q3ZCT8 623 aa3.47□□□□□ -1.85
CD44-215ENST00000525241 ZNF789Q5FWF6 425 aa3.47□□□□□ -1.85
CD44-215ENST00000525241 LCE3CQ5T5A8 94 aa3.47□□□□□ -1.85
CD44-215ENST00000525241 LRRC38Q5VT99 294 aa3.47□□□□□ -1.85
CD44-215ENST00000525241 ZNF841Q6ZN19 808 aa3.47□□□□□ -1.85
CD44-215ENST00000525241 PIWIL3Q7Z3Z3 882 aaKnown RBP3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms