RNA–Protein interactions for RNA: ENST00000520909.5

CLK4-207, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 1,305 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-207ENST00000520909 SNX24Q9Y343 169 aa3.8□□□□□ -1.8
CLK4-207ENST00000520909 UTP11Q9Y3A2 253 aaKnown RBP3.8□□□□□ -1.8
CLK4-207ENST00000520909 CPQQ9Y646 472 aa3.8□□□□□ -1.8
CLK4-207ENST00000520909 LAMA3Q16787 3333 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 KIAA1671Q9BY89 1806 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 ZSCAN5CA6NGD5 496 aaPredicted RBP3.79□□□□□ -1.8
CLK4-207ENST00000520909 HACD1B0YJ81 288 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 SMIM1B2RUZ4 78 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 F5H5T6 163 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 DFFAO00273 331 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 KCNN4O15554 427 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 MFSD11O43934 449 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 ERLIN1O75477 346 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 KRT14P02533 472 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 ZSCAN5DPP0CG00 497 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 ETS1P14921 441 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 SP100P23497 879 aaPredicted RBP3.79□□□□□ -1.8
CLK4-207ENST00000520909 SERPINB6P35237 376 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 RPL21P46778 160 aaKnown RBP3.79□□□□□ -1.8
CLK4-207ENST00000520909 BLKP51451 505 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 DSCR10P59022 87 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 VSNL1P62760 191 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 EEF1A1P68104 462 aaKnown RBP3.79□□□□□ -1.8
CLK4-207ENST00000520909 SLC7A9P82251 487 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 AP1B1Q10567 949 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 XRCC4Q13426 336 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 PTK6Q13882 451 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 BRD3Q15059 726 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 PAFAH1B3Q15102 231 aaKnown RBP3.79□□□□□ -1.8
CLK4-207ENST00000520909 PDK1Q15118 436 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 TEAD2Q15562 447 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 TRADDQ15628 312 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 SLC45A4Q5BKX6 768 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 MS4A13Q5J8X5 152 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 RABGAP1LQ5R372 815 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 RARS2Q5T160 578 aaKnown RBP3.79□□□□□ -1.8
CLK4-207ENST00000520909 STXBP5Q5T5C0 1151 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 EEF1A1P5Q5VTE0 462 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 DUPD1Q68J44 220 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 NCBP2-AS2Q69YL0 99 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 RFWD3Q6PCD5 774 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 PRUNE1Q86TP1 453 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 CDKL3Q8IVW4 592 aaPredicted RBP3.79□□□□□ -1.8
CLK4-207ENST00000520909 C1orf87Q8N0U7 546 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 CPXM2Q8N436 756 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 ALLCQ8N6M5 410 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 CCDC89Q8N998 374 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 LEMD2Q8NC56 503 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 VN1R2Q8NFZ6 395 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 ITFG1Q8TB96 612 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 TFB1MQ8WVM0 346 aaKnown RBP3.79□□□□□ -1.8
CLK4-207ENST00000520909 ING5Q8WYH8 240 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 RUBCNQ92622 972 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 IGSF8Q969P0 613 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 AZIN2Q96A70 460 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 SH3KBP1Q96B97 665 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 ZNF707Q96C28 371 aaPredicted RBP3.79□□□□□ -1.8
CLK4-207ENST00000520909 CELF6Q96J87 481 aaKnown RBP3.79□□□□□ -1.8
CLK4-207ENST00000520909 ZNF570Q96NI8 536 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 RPRD1AQ96P16 312 aaPredicted RBP3.79□□□□□ -1.8
CLK4-207ENST00000520909 QKIQ96PU8 341 aaKnown RBP eCLIP3.79□□□□□ -1.8
CLK4-207ENST00000520909 LGMNQ99538 433 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 DDX50Q9BQ39 737 aaKnown RBP3.79□□□□□ -1.8
CLK4-207ENST00000520909 TMEM121Q9BTD3 319 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 ZYG11BQ9C0D3 744 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 CHODLQ9H9P2 273 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 GDF3Q9NR23 364 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 ARGLU1Q9NWB6 273 aaPredicted RBP3.79□□□□□ -1.8
CLK4-207ENST00000520909 SEPT10Q9P0V9 454 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 ANAPC5Q9UJX4 755 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 LSM7Q9UK45 103 aaKnown RBP3.79□□□□□ -1.8
CLK4-207ENST00000520909 TRANK1O15050 2925 aa3.79□□□□□ -1.8
CLK4-207ENST00000520909 PLXNA4Q9HCM2 1894 aa3.78□□□□□ -1.8
CLK4-207ENST00000520909 IGLV3-10A0A075B6K4 115 aa3.78□□□□□ -1.8
CLK4-207ENST00000520909 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.78□□□□□ -1.8
CLK4-207ENST00000520909 BCLAF3A2AJT9 711 aaKnown RBP3.78□□□□□ -1.8
CLK4-207ENST00000520909 ARHGAP42A6NI28 874 aa3.78□□□□□ -1.8
CLK4-207ENST00000520909 CBY3A6NI87 242 aa3.78□□□□□ -1.8
CLK4-207ENST00000520909 F5H423 210 aaPredicted RBP3.78□□□□□ -1.8
CLK4-207ENST00000520909 RNF103O00237 685 aa3.78□□□□□ -1.8
CLK4-207ENST00000520909 NCAM2O15394 837 aa3.78□□□□□ -1.8
CLK4-207ENST00000520909 TBL1XO60907 577 aa3.78□□□□□ -1.8
CLK4-207ENST00000520909 OLFM2O95897 454 aa3.78□□□□□ -1.8
CLK4-207ENST00000520909 JCHAINP01591 159 aa3.78□□□□□ -1.8
CLK4-207ENST00000520909 IGLV1-44P01699 117 aa3.78□□□□□ -1.8
CLK4-207ENST00000520909 H2AFXP16104 143 aaPredicted RBP3.78□□□□□ -1.8
CLK4-207ENST00000520909 CEBPBP17676 345 aa3.78□□□□□ -1.8
CLK4-207ENST00000520909 OR1E1P30953 314 aa3.78□□□□□ -1.8
CLK4-207ENST00000520909 STIP1P31948 543 aaKnown RBP3.78□□□□□ -1.8
CLK4-207ENST00000520909 RPL22P35268 128 aaKnown RBP3.78□□□□□ -1.8
CLK4-207ENST00000520909 ACTN2P35609 894 aa3.78□□□□□ -1.8
CLK4-207ENST00000520909 TNNT3P45378 269 aaPredicted RBP3.78□□□□□ -1.8
CLK4-207ENST00000520909 PAPOLAP51003 745 aaKnown RBP3.78□□□□□ -1.8
CLK4-207ENST00000520909 NDST2P52849 883 aa3.78□□□□□ -1.8
CLK4-207ENST00000520909 PRKAA2P54646 552 aa3.78□□□□□ -1.8
CLK4-207ENST00000520909 PLTPP55058 493 aa3.78□□□□□ -1.8
CLK4-207ENST00000520909 RPS24P62847 133 aaKnown RBP3.78□□□□□ -1.8
CLK4-207ENST00000520909 GALNT2Q10471 571 aa3.78□□□□□ -1.8
CLK4-207ENST00000520909 CALCOCO2Q13137 446 aa3.78□□□□□ -1.8
CLK4-207ENST00000520909 ZNF177Q13360 481 aaPredicted RBP3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms