RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 NPFFR1Q9GZQ6 430 aa6.73□□□□□ -1.33
SDCBP-208ENST00000520228 FAM234AQ9H0X4 552 aa6.73□□□□□ -1.33
SDCBP-208ENST00000520228 GRPEL1Q9HAV7 217 aa6.73□□□□□ -1.33
SDCBP-208ENST00000520228 PLAC1Q9HBJ0 212 aa6.73□□□□□ -1.33
SDCBP-208ENST00000520228 KRCC1Q9NPI7 259 aaPredicted RBP6.73□□□□□ -1.33
SDCBP-208ENST00000520228 HAUS2Q9NVX0 235 aa6.73□□□□□ -1.33
SDCBP-208ENST00000520228 RBM22Q9NW64 420 aaKnown RBP eCLIP6.73□□□□□ -1.33
SDCBP-208ENST00000520228 TRIM10Q9UDY6 481 aa6.73□□□□□ -1.33
SDCBP-208ENST00000520228 ITM2BQ9Y287 266 aa6.73□□□□□ -1.33
SDCBP-208ENST00000520228 MUC22E2RYF6 1773 aaPredicted RBP6.72□□□□□ -1.33
SDCBP-208ENST00000520228 TEX13CA0A0J9YWL9 993 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 A0A1W2PR77 199 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 TSPAN11A1L157 253 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 KCNK1O00180 336 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 TLR4O00206 839 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 TRAFD1O14545 582 aaPredicted RBP6.72□□□□□ -1.33
SDCBP-208ENST00000520228 LDB2O43679 373 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 DFNA5O60443 496 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 CST8O60676 142 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 TMEM63AO94886 807 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 PAK4O96013 591 aaPredicted RBP6.72□□□□□ -1.33
SDCBP-208ENST00000520228 JCHAINP01591 159 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 KRT10P13645 584 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 SLC2A4P14672 509 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 SRD5A1P18405 259 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 EDN2P20800 178 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 HNRNPA2B1P22626 353 aaKnown RBP6.72□□□□□ -1.33
SDCBP-208ENST00000520228 CTNNA1P35221 906 aaKnown RBP6.72□□□□□ -1.33
SDCBP-208ENST00000520228 ARL1P40616 181 aaPredicted RBP6.72□□□□□ -1.33
SDCBP-208ENST00000520228 MARCKSL1P49006 195 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 NR2C2P49116 596 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 MAXP61244 160 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 ELP6Q0PNE2 266 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 OVGP1Q12889 678 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 TAF11Q15544 211 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 TFDP3Q5H9I0 405 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 Q6ZSV7 163 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 RRM2BQ7LG56 351 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 DGLUCYQ7Z3D6 616 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 PEX26Q7Z412 305 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 ZSCAN30Q86W11 494 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 DENND6AQ8IWF6 608 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 LRRC8AQ8IWT6 810 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 CCDC13Q8IYE1 715 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 SYCE1Q8N0S2 351 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 RNF10Q8N5U6 811 aaKnown RBP6.72□□□□□ -1.33
SDCBP-208ENST00000520228 EXD1Q8NHP7 514 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 CXorf40AQ8TE69 158 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 PDCD6IPQ8WUM4 868 aaKnown RBP6.72□□□□□ -1.33
SDCBP-208ENST00000520228 KRT35Q92764 455 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 SNAPC3Q92966 411 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 HDAC11Q96DB2 347 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 KLHL15Q96M94 604 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 CAMK1GQ96NX5 476 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 WRAP53Q9BUR4 548 aaKnown RBP6.72□□□□□ -1.33
SDCBP-208ENST00000520228 TSGA10Q9BZW7 698 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 POLR1EQ9GZS1 481 aaKnown RBP6.72□□□□□ -1.33
SDCBP-208ENST00000520228 GAREM1Q9H706 876 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 NT5MQ9NPB1 228 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 AMACRQ9UHK6 382 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 CA5BQ9Y2D0 317 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 TTLL3Q9Y4R7 772 aa6.72□□□□□ -1.33
SDCBP-208ENST00000520228 hCG_1818297A0A087WSY0 165 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 A0A0U1RQJ8 604 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 A0A1W2PQ67 120 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 H3BNX3 289 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 RAD51BO15315 384 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 KRT86O43790 486 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 MAGEC1O60732 1142 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 SOCS5O75159 536 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 FTCDO95954 541 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 ZNF8P17098 575 aaPredicted RBP6.71□□□□□ -1.34
SDCBP-208ENST00000520228 CTNNA2P26232 953 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 CETN2P41208 172 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 RFX2P48378 723 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 PEX5P50542 639 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 RWDD2BP57060 319 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 IFI35P80217 286 aaPredicted RBP6.71□□□□□ -1.34
SDCBP-208ENST00000520228 PPIDQ08752 370 aaKnown RBP6.71□□□□□ -1.34
SDCBP-208ENST00000520228 AP1B1Q10567 949 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 TMEM52BQ4KMG9 183 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 ARMC12Q5T9G4 340 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 ZNF367Q7RTV3 350 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 R3HCC1LQ7Z5L2 792 aaKnown RBP6.71□□□□□ -1.34
SDCBP-208ENST00000520228 TBC1D26Q86UD7 250 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 NT5DC3Q86UY8 548 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 IQCHQ86VS3 1027 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 PELI3Q8N2H9 469 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 UBL4BQ8N7F7 174 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 TFB1MQ8WVM0 346 aaKnown RBP6.71□□□□□ -1.34
SDCBP-208ENST00000520228 P3H4Q92791 437 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 KLHL29Q96CT2 875 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 ECHDC3Q96DC8 303 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 NSMCE3Q96MG7 304 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 OLFM3Q96PB7 478 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 SEMA3CQ99985 751 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 BRF2Q9HAW0 419 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 GDF3Q9NR23 364 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 ANKRD10Q9NXR5 420 aa6.71□□□□□ -1.34
SDCBP-208ENST00000520228 TAS2R10Q9NYW0 307 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms