RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 TMED9Q9BVK6 235 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 PPIEQ9UNP9 301 aaKnown RBP11.26□□□□□ -0.61
SYNPO-204ENST00000519664 ECM29Q5VYK3 1845 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 A0A1W2PP55 124 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 FAM92AA1XBS5 289 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 RIIAD1A6NNX1 92 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 IFNGP01579 166 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 AKR1D1P51857 326 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 INHBCP55103 352 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 MC1RQ01726 317 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 FAM217AQ8IXS0 508 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 GALNT6Q8NCL4 622 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 WFIKKN2Q8TEU8 576 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 TRUB1Q8WWH5 349 aaKnown RBP11.25□□□□□ -0.61
SYNPO-204ENST00000519664 OVCA2Q8WZ82 227 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 NARS2Q96I59 477 aaKnown RBP11.25□□□□□ -0.61
SYNPO-204ENST00000519664 PCBD2Q9H0N5 130 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.25□□□□□ -0.61
SYNPO-204ENST00000519664 A8MV72 311 aaPredicted RBP11.25□□□□□ -0.61
SYNPO-204ENST00000519664 WASH3PC4AMC7 463 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 H0YAE9 185 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 SLC1A7O00341 560 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 CDRT1O95170 752 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 CD9P21926 228 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 FSHRP23945 695 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 CCR7P32248 378 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 SLC36A3Q495N2 470 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 CCDC28AQ8IWP9 274 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 ALDH16A1Q8IZ83 802 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 FBXO15Q8NCQ5 510 aaPredicted RBP11.25□□□□□ -0.61
SYNPO-204ENST00000519664 FAM46DQ8NEK8 389 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 FCGR1BQ92637 280 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 LHPPQ9H008 270 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 IL20RAQ9UHF4 553 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 OR1A2Q9Y585 309 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 DAPL1A0PJW8 107 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 FAM170BA6NMN3 283 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 RLN1P04808 185 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 PPP2R2BQ00005 443 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 ZNF630Q2M218 657 aaPredicted RBP11.25□□□□□ -0.61
SYNPO-204ENST00000519664 C1QTNF12Q5T7M4 302 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 SLC30A6Q6NXT4 461 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 FAM180AQ6UWF9 173 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 FUNDC1Q8IVP5 155 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 IQCF2Q8IXL9 164 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 GPR135Q8IZ08 494 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 TEX37Q96LM6 180 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 P2RY13Q9BPV8 354 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 TSSK6Q9BXA6 273 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 ELAC1Q9H777 363 aaKnown RBP11.25□□□□□ -0.61
SYNPO-204ENST00000519664 ELL3Q9HB65 397 aaPredicted RBP11.25□□□□□ -0.61
SYNPO-204ENST00000519664 BACE2Q9Y5Z0 518 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 GVINP1Q7Z2Y8 2422 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 CENPBD1B2RD01 187 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 LCKP06239 509 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 TFPIP10646 304 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 AHCYP23526 432 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 DPP6P42658 865 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 KHKP50053 298 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 RHAGQ02094 409 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 FPGSQ05932 587 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 SUZ12Q15022 739 aaKnown RBP11.25□□□□□ -0.61
SYNPO-204ENST00000519664 LIPJQ5W064 366 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 DCUN1D3Q8IWE4 304 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 OR7G3Q8NG95 312 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 TFAP2CQ92754 450 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 MACROD1Q9BQ69 325 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 DOHHQ9BU89 302 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 NAA50Q9GZZ1 169 aaKnown RBP11.25□□□□□ -0.61
SYNPO-204ENST00000519664 FZD3Q9NPG1 666 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 C14orf119Q9NWQ9 140 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 ZDHHC7Q9NXF8 308 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 CFL2Q9Y281 166 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 PCDHB11Q9Y5F2 797 aa11.25□□□□□ -0.61
SYNPO-204ENST00000519664 KIAA1551Q9HCM1 1747 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 CABIN1Q9Y6J0 2220 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 STRCP1A6NGW2 1772 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 IGLON5A6NGN9 336 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 KHDRBS3O75525 346 aaKnown RBP11.24□□□□□ -0.61
SYNPO-204ENST00000519664 PSKH1P11801 424 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 SDC1P18827 310 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 SDC2P34741 201 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 GPR150Q8NGU9 434 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 PIGKQ92643 395 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 RFKQ969G6 155 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 TCEAL4Q96EI5 215 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 SORBS1Q9BX66 1292 aaKnown RBP11.24□□□□□ -0.61
SYNPO-204ENST00000519664 ANKRD60Q9BZ19 345 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 ACPTQ9BZG2 426 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 C11orf49Q9H6J7 331 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 ARMC1Q9NVT9 282 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 ING3Q9NXR8 418 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 PCDHGA8Q9Y5G5 932 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 ADAMTS7Q9UKP4 1686 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 EDDM13A0A1B0GTR0 161 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 BMXP51813 675 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 CTSCP53634 463 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 LGALS3BPQ08380 585 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 GINS1Q14691 196 aa11.24□□□□□ -0.61
SYNPO-204ENST00000519664 TAF13Q15543 124 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms