RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 ACSS3Q9H6R3 686 aa8.77□□□□□ -1.01
HDAC3-215ENST00000519474 KCNK13Q9HB14 408 aa8.77□□□□□ -1.01
HDAC3-215ENST00000519474 PRDM9Q9NQV7 894 aa8.77□□□□□ -1.01
HDAC3-215ENST00000519474 SNX15Q9NRS6 342 aa8.77□□□□□ -1.01
HDAC3-215ENST00000519474 ZNF358Q9NW07 568 aa8.77□□□□□ -1.01
HDAC3-215ENST00000519474 KCMF1Q9P0J7 381 aa8.77□□□□□ -1.01
HDAC3-215ENST00000519474 MTRF1LQ9UGC7 380 aaKnown RBP8.77□□□□□ -1.01
HDAC3-215ENST00000519474 BLOC1S6Q9UL45 172 aa8.77□□□□□ -1.01
HDAC3-215ENST00000519474 TMA7Q9Y2S6 64 aaKnown RBP8.77□□□□□ -1.01
HDAC3-215ENST00000519474 CLDN16Q9Y5I7 305 aa8.77□□□□□ -1.01
HDAC3-215ENST00000519474 IKBKGQ9Y6K9 419 aa8.77□□□□□ -1.01
HDAC3-215ENST00000519474 A0A087X1B8 175 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 A0A096LPK6 155 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 IGKV3D-11A0A0A0MRZ8 115 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 TCRBV16S1A1N1A0A5B0 115 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 BLACEA4D250 179 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 ANKUB1A6NFN9 424 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 WIPF3A6NGB9 483 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 LRRC14BA6NHZ5 514 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 TRIM64CA6NLI5 447 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 A8MUA0 341 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 SUPT3HB4E1H0 165 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 TGFBR3LH3BV60 316 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 K7EPI3 171 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 CYR61O00622 381 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 ERI3O43414 337 aaKnown RBP8.76□□□□□ -1.01
HDAC3-215ENST00000519474 SUPT3HO75486 399 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 KLHL2O95198 593 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 TGFB1P01137 390 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 RNF224P0DH78 156 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 MAOAP21397 527 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 JAK1P23458 1154 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 GSTM2P28161 218 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 PHBP35232 272 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 CLK1P49759 484 aaKnown RBP8.76□□□□□ -1.01
HDAC3-215ENST00000519474 GPR143P51810 404 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 HNRNPFP52597 415 aaKnown RBP8.76□□□□□ -1.01
HDAC3-215ENST00000519474 PLA2G16P53816 162 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 SLC26A5P58743 744 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 AP2B1P63010 937 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 SKP1P63208 163 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 SRSF11Q05519 484 aaKnown RBP8.76□□□□□ -1.01
HDAC3-215ENST00000519474 LAPTM5Q13571 262 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 SLMAPQ14BN4 828 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 UAP1Q16222 522 aaPredicted RBP8.76□□□□□ -1.01
HDAC3-215ENST00000519474 EXT1Q16394 746 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 HIST2H2ACQ16777 129 aaPredicted RBP8.76□□□□□ -1.01
HDAC3-215ENST00000519474 FAM83EQ2M2I3 478 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 ACER2Q5QJU3 275 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 HIST2H2AA3Q6FI13 130 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 CRLF3Q8IUI8 442 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 LAS2Q8IYD9 372 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 CYP4X1Q8N118 509 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 KIF2BQ8N4N8 673 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 TMEM52Q8NDY8 209 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 OR2L5Q8NG80 312 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 ZNF473Q8WTR7 871 aaKnown RBP8.76□□□□□ -1.01
HDAC3-215ENST00000519474 EXT2Q93063 718 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 FAR2Q96K12 515 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 LPAR4Q99677 370 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 SH3GL3Q99963 347 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 SLC29A3Q9BZD2 475 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 REXO4Q9GZR2 422 aaKnown RBP8.76□□□□□ -1.01
HDAC3-215ENST00000519474 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.76□□□□□ -1.01
HDAC3-215ENST00000519474 AGPAT4Q9NRZ5 378 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 NUDT4Q9NZJ9 180 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 RABL2BQ9UNT1 228 aa8.76□□□□□ -1.01
HDAC3-215ENST00000519474 TRAV17A0A0B4J275 112 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 MYOCOSA0A1B0GUC4 107 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 OR5H15A6NDH6 313 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 ACSL3O95573 720 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 S100BP04271 92 aaPredicted RBP8.75□□□□□ -1.01
HDAC3-215ENST00000519474 NAT2P11245 290 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 CD53P19397 219 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 MAGEA12P43365 314 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 MTTPP55157 894 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 LIM2P55344 173 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 RAB38P57729 211 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 ZNF33BQ06732 778 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 PCBP2Q15366 365 aaKnown RBP eCLIP8.75□□□□□ -1.01
HDAC3-215ENST00000519474 MEP1AQ16819 746 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 PFKFB4Q16877 469 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 DEPDC1Q5TB30 811 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 SPINK14Q6IE38 97 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 MED27Q6P2C8 311 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 CEP128Q6ZU80 1094 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 LRRC70Q7Z2Q7 622 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 BEST3Q8N1M1 668 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 RNF175Q8N4F7 328 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 TMEM151AQ8N4L1 468 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 TEX9Q8N6V9 391 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 ST6GALNAC3Q8NDV1 305 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 OR7G3Q8NG95 312 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 KIF18AQ8NI77 898 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 UHMK1Q8TAS1 419 aaKnown RBP8.75□□□□□ -1.01
HDAC3-215ENST00000519474 UBTD2Q8WUN7 234 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 DCAKDQ8WVC6 231 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 ISL2Q96A47 359 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 MPP4Q96JB8 637 aa8.75□□□□□ -1.01
HDAC3-215ENST00000519474 MAGEB10Q96LZ2 347 aaPredicted RBP8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms