RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 HLA-DPB1P04440 258 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 CSF2RAP15509 400 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 CPOXP36551 454 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 ARF5P84085 180 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 TUBA3EQ6PEY2 450 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 BTN2A1Q7KYR7 527 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 MRPL10Q7Z7H8 261 aaKnown RBP12.19□□□□□ -0.46
USP53-209ENST00000514665 ZNF676Q8N7Q3 588 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 SLC25A36Q96CQ1 311 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 TMEM80Q96HE8 168 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 PHF24Q9UPV7 400 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 KRT33AO76009 404 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 RHOP08100 348 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 SPINT3P49223 89 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 BMXP51813 675 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 PHC1P78364 1004 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 CLCA4Q14CN2 919 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 KIAA0319Q5VV43 1072 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 CRTC1Q6UUV9 634 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 MINDY2Q8NBR6 621 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 OR51G2Q8NGK0 314 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 WDR83Q9BRX9 315 aaKnown RBP12.19□□□□□ -0.46
USP53-209ENST00000514665 BEX2Q9BXY8 128 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 MMP27Q9H306 513 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 BEX1Q9HBH7 125 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 PAK6Q9NQU5 681 aaPredicted RBP12.19□□□□□ -0.46
USP53-209ENST00000514665 GPRC5BQ9NZH0 403 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 AASSQ9UDR5 926 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 MKLN1Q9UL63 735 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 MYH14Q7Z406 1995 aaKnown RBP12.19□□□□□ -0.46
USP53-209ENST00000514665 KMOO15229 486 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 B4GALT2O60909 372 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 FSHRP23945 695 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 HNRNPA0Q13151 305 aaKnown RBP12.19□□□□□ -0.46
USP53-209ENST00000514665 CBLBQ13191 982 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 PGM2L1Q6PCE3 622 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 ZNF613Q6PF04 617 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 ZNF551Q7Z340 670 aaPredicted RBP12.19□□□□□ -0.46
USP53-209ENST00000514665 LHFPL3Q86UP9 236 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 ATCAYQ86WG3 371 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 SNX29P2Q8IUI4 249 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 ARRDC2Q8TBH0 407 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 EFHD2Q96C19 240 aaPredicted RBP12.19□□□□□ -0.46
USP53-209ENST00000514665 SCRN2Q96FV2 425 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 CNDP2Q96KP4 475 aaKnown RBP12.19□□□□□ -0.46
USP53-209ENST00000514665 LHPPQ9H008 270 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 MOV10Q9HCE1 1003 aaKnown RBP12.19□□□□□ -0.46
USP53-209ENST00000514665 ZNF224Q9NZL3 707 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 CEP290O15078 2479 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 ELOA3DA6NLF2 546 aaPredicted RBP12.19□□□□□ -0.46
USP53-209ENST00000514665 SEMA3DO95025 777 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 HPRP00739 348 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 CD9P21926 228 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 ACSL1P33121 698 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 CLCN7P51798 805 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 GBX2P52951 348 aaPredicted RBP12.19□□□□□ -0.46
USP53-209ENST00000514665 PRMT2P55345 433 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 OR12D2P58182 307 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 HSF2Q03933 536 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 PTPRRQ15256 657 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 ELOA3BQ3SY89 546 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 AMZ1Q400G9 498 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 XKR4Q5GH76 650 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 NIPAL1Q6NVV3 410 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 PIWIL3Q7Z3Z3 882 aaKnown RBP12.19□□□□□ -0.46
USP53-209ENST00000514665 RETREG3Q86VR2 466 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 ELOA3Q8NG57 546 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 MZB1Q8WU39 189 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 EGLN2Q96KS0 407 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 CD180Q99467 661 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 C5AR2Q9P296 337 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 HCSTQ9UBK5 93 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 RIMS3Q9UJD0 308 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 MGAT4BQ9UQ53 548 aa12.19□□□□□ -0.46
USP53-209ENST00000514665 ALDOCP09972 364 aaKnown RBP12.18□□□□□ -0.46
USP53-209ENST00000514665 CCL5P13501 91 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 TYRP1P17643 537 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 AGXTP21549 392 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 TGFBR2P37173 567 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 DNASE1L1P49184 302 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 INHBCP55103 352 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 RCAN2Q14206 197 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 GRM2Q14416 872 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 JPH3Q8WXH2 748 aaPredicted RBP12.18□□□□□ -0.46
USP53-209ENST00000514665 TUBA1CQ9BQE3 449 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 KCNK12Q9HB15 430 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 HEBP2Q9Y5Z4 205 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 NWD2Q9ULI1 1742 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 NPIPB15A6NHN6 443 aaPredicted RBP12.18□□□□□ -0.46
USP53-209ENST00000514665 LCKP06239 509 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 CD2P06729 351 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 DBIP07108 87 aaKnown RBP12.18□□□□□ -0.46
USP53-209ENST00000514665 RPS17P08708 135 aaKnown RBP12.18□□□□□ -0.46
USP53-209ENST00000514665 AKR1D1P51857 326 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 FCHO2Q0JRZ9 810 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 KCNC3Q14003 757 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 C6orf120Q7Z4R8 191 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 REM2Q8IYK8 340 aaPredicted RBP12.18□□□□□ -0.46
USP53-209ENST00000514665 SLC5A8Q8N695 610 aa12.18□□□□□ -0.46
USP53-209ENST00000514665 RHBDF1Q96CC6 855 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms