RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 PCDHGA11Q9Y5H2 935 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 SNX11Q9Y5W9 270 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 GVINP1Q7Z2Y8 2422 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 A0A0G2JN53 185 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 PRSS51A0A1B0GVH4 220 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 OR6C70A6NIJ9 312 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 ARHGEF9O43307 516 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 STK16O75716 305 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 PRKD3O94806 890 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 SBK3P0C264 359 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 LINC00032P0C843 101 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 SPNP16150 400 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 PRKCAP17252 672 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 POLR2CP19387 275 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 IRF8Q02556 426 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 TRAF3Q13114 568 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 AQP6Q13520 282 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 OXA1LQ15070 435 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 SF1Q15637 639 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 BORAQ6PGQ7 559 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 PARGQ86W56 976 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 TRIM69Q86WT6 500 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 CCDC28AQ8IWP9 274 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 OR2L2Q8NH16 312 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 RAB2BQ8WUD1 216 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 PIK3R3Q92569 461 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 PKP4Q99569 1192 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 WDR12Q9GZL7 423 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 ARRDC1-AS1Q9H2J1 176 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 TFB2MQ9H5Q4 396 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 OXSMQ9NWU1 459 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 SNX6Q9UNH7 406 aa8.32□□□□□ -1.08
LIMCH1-209ENST00000509277 A0A1B0GTL3 188 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 SMLR1H3BR10 107 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 SAP18O00422 153 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 KLF11O14901 512 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 SERPINI2O75830 405 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 AP2A2O94973 939 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 EIF2S1P05198 315 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 TRIM23P36406 574 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 CLPPQ16740 277 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 TBRG1Q3YBR2 411 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 SOWAHCQ53LP3 525 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 XKR6Q5GH73 641 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 EEF1AKMT2Q5JPI9 291 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 SAMD4BQ5PRF9 694 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 AGTRAPQ6RW13 159 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 EPGNQ6UW88 154 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 SBSNQ6UWP8 590 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 SLC36A4Q6YBV0 504 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 C16orf62Q7Z3J2 963 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 CLEC14AQ86T13 490 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 AMIGO1Q86WK6 493 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 TIGD4Q8IY51 512 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 C8orf59Q8N0T1 100 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 ZNF687Q8N1G0 1237 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 LRRC20Q8TCA0 184 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 TFAP2CQ92754 450 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 ZNF597Q96LX8 424 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 ATOH8Q96SQ7 321 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 MACROD1Q9BQ69 325 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 MAP1BP46821 2468 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 PCM1Q15154 2024 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 ASCC3Q8N3C0 2202 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 CASC3O15234 703 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 ANXA6P08133 673 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 SNRPB2P08579 225 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 EPB42P16452 691 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 SLC9A3P48764 834 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 ST13P50502 369 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 AFF3P51826 1226 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 TUBA1BP68363 451 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 IFITM2Q01629 132 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 GTF2H2Q13888 395 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 FZD2Q14332 565 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 TEAD4Q15561 434 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 PLEKHS1Q5SXH7 462 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 GTF2H2CQ6P1K8 395 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 TUBA1AQ71U36 451 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 CUZD1Q86UP6 607 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 SLC22A15Q8IZD6 547 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 OR8H1Q8NGG4 311 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 ST8SIA2Q92186 375 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 ASB9Q96DX5 294 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 PPM1MQ96MI6 270 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 MTERF1Q99551 399 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 IL21RQ9HBE5 538 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 ABCB9Q9NP78 766 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 TAAR2Q9P1P5 351 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 ANKMY1Q9P2S6 941 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 PCDHB3Q9Y5E6 796 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 ARID1BQ8NFD5 2236 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 ZFC3H1O60293 1989 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 SCN8AQ9UQD0 1980 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 ALOX5P09917 674 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 CAPGP40121 348 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 HK2P52789 917 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 FOXA1P55317 472 aa8.31□□□□□ -1.08
LIMCH1-209ENST00000509277 TUBA4AP68366 448 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms