RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 CHRM3P20309 590 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 DDCP20711 480 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 CDH3P22223 829 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 F8A1P23610 371 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 PRDX3P30048 256 aaKnown RBP4.36□□□□□ -1.71
NUP54-206ENST00000508465 MAGEA6P43360 314 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 CAPZBP47756 277 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 CD151P48509 253 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 TTPAP49638 278 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 ANXA11P50995 505 aaKnown RBP4.36□□□□□ -1.71
NUP54-206ENST00000508465 PGGT1BP53609 377 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 FOXG1P55316 489 aaPredicted RBP4.36□□□□□ -1.71
NUP54-206ENST00000508465 TMPRSS3P57727 454 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 SARNPP82979 210 aaKnown RBP4.36□□□□□ -1.71
NUP54-206ENST00000508465 CDK16Q00536 496 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 CTBP1Q13363 440 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 THOC5Q13769 683 aaKnown RBP4.36□□□□□ -1.71
NUP54-206ENST00000508465 DHX34Q14147 1143 aaKnown RBP4.36□□□□□ -1.71
NUP54-206ENST00000508465 ITIH4Q14624 930 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 TPSAB1Q15661 275 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 CCSMST1Q4G0I0 132 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 ATP1A1-AS1Q5TC04 95 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 FAM69BQ5VUD6 431 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 LCN10Q6JVE6 187 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 FAM199XQ6PEV8 388 aaPredicted RBP4.36□□□□□ -1.71
NUP54-206ENST00000508465 INO80CQ6PI98 192 aaPredicted RBP4.36□□□□□ -1.71
NUP54-206ENST00000508465 CEACAM20Q6UY09 585 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 PACS1Q6VY07 963 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 CENPUQ71F23 418 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 YTHDF3Q7Z739 585 aaKnown RBP4.36□□□□□ -1.71
NUP54-206ENST00000508465 SDCCAG8Q86SQ7 713 aaPredicted RBP4.36□□□□□ -1.71
NUP54-206ENST00000508465 AMIGO1Q86WK6 493 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 DENND6AQ8IWF6 608 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 ADGRF3Q8IZF5 1079 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 NAT8LQ8N9F0 302 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 EXD3Q8N9H8 876 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 MCUQ8NE86 351 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 ACVR1CQ8NER5 493 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 OR52E1Q8NGJ3 308 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 SKA2Q8WVK7 121 aaPredicted RBP4.36□□□□□ -1.71
NUP54-206ENST00000508465 ZFPM2Q8WW38 1151 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 TBRG4Q969Z0 631 aaKnown RBP eCLIP4.36□□□□□ -1.71
NUP54-206ENST00000508465 BIRC8Q96P09 236 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 SERPINB12Q96P63 405 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 IL17FQ96PD4 163 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 RUFY1Q96T51 708 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 KRT12Q99456 494 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 C19orf43Q9BQ61 176 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 TRIM51Q9BSJ1 452 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 DDA1Q9BW61 102 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 CARD6Q9BX69 1037 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 ULBP3Q9BZM4 244 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 SPRTNQ9H040 489 aaPredicted RBP4.36□□□□□ -1.71
NUP54-206ENST00000508465 P2RY12Q9H244 342 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 MVB12BQ9H7P6 319 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 IFT22Q9H7X7 185 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 VPS37BQ9H9H4 285 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 EIF2B3Q9NR50 452 aaKnown RBP4.36□□□□□ -1.71
NUP54-206ENST00000508465 FBXO6Q9NRD1 293 aaPredicted RBP4.36□□□□□ -1.71
NUP54-206ENST00000508465 C20orf96Q9NUD7 363 aaPredicted RBP4.36□□□□□ -1.71
NUP54-206ENST00000508465 SOHLH2Q9NX45 425 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 SIDT1Q9NXL6 827 aaKnown RBP4.36□□□□□ -1.71
NUP54-206ENST00000508465 EPHA6Q9UF33 1036 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 ASIC3Q9UHC3 531 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 LNPEPQ9UIQ6 1025 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 ANAPC5Q9UJX4 755 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 RIMKLBQ9ULI2 386 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 ICKQ9UPZ9 632 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 CDYLQ9Y232 598 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 ASF1AQ9Y294 204 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 PCDHGA3Q9Y5H0 932 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 HEBP2Q9Y5Z4 205 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 MRPS18BQ9Y676 258 aaKnown RBP4.36□□□□□ -1.71
NUP54-206ENST00000508465 NFS1Q9Y697 457 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 SAR1BQ9Y6B6 198 aa4.36□□□□□ -1.71
NUP54-206ENST00000508465 MN1Q10571 1320 aaPredicted RBP4.36□□□□□ -1.71
NUP54-206ENST00000508465 COL12A1Q99715 3063 aa4.35□□□□□ -1.71
NUP54-206ENST00000508465 GOLGA6L10A0A0M3HER8 536 aa4.35□□□□□ -1.71
NUP54-206ENST00000508465 ZCWPW2A0A1B0GU75 182 aa4.35□□□□□ -1.71
NUP54-206ENST00000508465 MAGEB16A2A368 324 aa4.35□□□□□ -1.71
NUP54-206ENST00000508465 KLHL33A6NCF5 533 aa4.35□□□□□ -1.71
NUP54-206ENST00000508465 EIF4E1BA6NMX2 242 aaKnown RBP4.35□□□□□ -1.71
NUP54-206ENST00000508465 ISM1B1AKI9 464 aa4.35□□□□□ -1.71
NUP54-206ENST00000508465 AP3B1O00203 1094 aa4.35□□□□□ -1.71
NUP54-206ENST00000508465 CES2O00748 559 aa4.35□□□□□ -1.71
NUP54-206ENST00000508465 PRMT5O14744 637 aaPredicted RBP4.35□□□□□ -1.71
NUP54-206ENST00000508465 LIN7AO14910 233 aaPredicted RBP4.35□□□□□ -1.71
NUP54-206ENST00000508465 TTI1O43156 1089 aa4.35□□□□□ -1.71
NUP54-206ENST00000508465 GPC4O75487 556 aa4.35□□□□□ -1.71
NUP54-206ENST00000508465 PIAS1O75925 651 aa4.35□□□□□ -1.71
NUP54-206ENST00000508465 SLCO2B1O94956 709 aa4.35□□□□□ -1.71
NUP54-206ENST00000508465 NTN1O95631 604 aa4.35□□□□□ -1.71
NUP54-206ENST00000508465 APOA4P06727 396 aa4.35□□□□□ -1.71
NUP54-206ENST00000508465 HNRNPCP07910 306 aaKnown RBP eCLIP4.35□□□□□ -1.71
NUP54-206ENST00000508465 CHRM5P08912 532 aaPredicted RBP4.35□□□□□ -1.71
NUP54-206ENST00000508465 UGT2B7P16662 529 aa4.35□□□□□ -1.71
NUP54-206ENST00000508465 TCP1P17987 556 aaKnown RBP4.35□□□□□ -1.71
NUP54-206ENST00000508465 IVDP26440 423 aa4.35□□□□□ -1.71
NUP54-206ENST00000508465 NDUFS1P28331 727 aa4.35□□□□□ -1.71
NUP54-206ENST00000508465 CASQ1P31415 396 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms