RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 ZMYM4Q5VZL5 1548 aa3.79□□□□□ -1.8
SMC4-224ENST00000494612 RAPGEF6Q8TEU7 1601 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 C5orf51A6NDU8 294 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 SIGLEC5O15389 551 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 SCO2O43819 266 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 KINO60870 393 aaKnown RBP3.78□□□□□ -1.8
SMC4-224ENST00000494612 GRAP2O75791 330 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 RPLP0P05388 317 aaKnown RBP3.78□□□□□ -1.8
SMC4-224ENST00000494612 VCLP18206 1134 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 PDHA2P29803 388 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 HLA-FP30511 346 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 SLC34A1Q06495 639 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 PPA1Q15181 289 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 NECTIN1Q15223 517 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 SGCBQ16585 318 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 LYPLAL1Q5VWZ2 237 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 MACC1Q6ZN28 852 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 TMEM126BQ8IUX1 230 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 TEX26Q8N6G2 289 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 SPC24Q8NBT2 197 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 CLEC1AQ8NC01 280 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 OR4D10Q8NGI6 311 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 MGARPQ8TDB4 240 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 SLC35C1Q96A29 364 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 SNRNP40Q96DI7 357 aaKnown RBP3.78□□□□□ -1.8
SMC4-224ENST00000494612 ZNF274Q96GC6 653 aaPredicted RBP3.78□□□□□ -1.8
SMC4-224ENST00000494612 USP28Q96RU2 1077 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 EGLN1Q9GZT9 426 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 AKIRIN1Q9H9L7 192 aaPredicted RBP3.78□□□□□ -1.8
SMC4-224ENST00000494612 GPR173Q9NS66 373 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 SPG21Q9NZD8 308 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 SNX5Q9Y5X3 404 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 ARHGEF12Q9NZN5 1544 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 IQSEC2Q5JU85 1478 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 MAGI2Q86UL8 1455 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 PTPRTO14522 1441 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 FHOD3Q2V2M9 1422 aa3.78□□□□□ -1.8
SMC4-224ENST00000494612 KIAA1217Q5T5P2 1943 aa3.78□□□□□ -1.81
SMC4-224ENST00000494612 HECW1Q76N89 1606 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 hCG_38984A0A1B0GV85 526 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 TRIM64A6NGJ6 449 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 TRIM64BA6NI03 449 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.77□□□□□ -1.81
SMC4-224ENST00000494612 SURF4O15260 269 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 KRT33AO76009 404 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 ZFAND5O76080 213 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 CHRNGP07510 517 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 NUDT17P0C025 328 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 SKILP12757 684 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 B4GALT1P15291 398 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 ATP6V1B1P15313 513 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 GIFP27352 417 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 HNF4AP41235 474 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 OR3A3P47888 321 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 CLK1P49759 484 aaKnown RBP3.77□□□□□ -1.81
SMC4-224ENST00000494612 ARHGAP1Q07960 439 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 ACTN3Q08043 901 aaPredicted RBP3.77□□□□□ -1.81
SMC4-224ENST00000494612 CNTN1Q12860 1018 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 CEACAM7Q14002 265 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 SPANXN4Q5MJ08 99 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 AGAP6Q5VW22 663 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 TMEM64Q6YI46 380 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 C15orf52Q6ZUT6 534 aaKnown RBP3.77□□□□□ -1.81
SMC4-224ENST00000494612 RFPL4BQ6ZWI9 263 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 ZER1Q7Z7L7 766 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 SLC43A2Q8N370 569 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 CCDC185Q8N715 623 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 ZNF614Q8N883 585 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 NAT8LQ8N9F0 302 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 LPCAT1Q8NF37 534 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 NUP37Q8NFH4 326 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 OR5T2Q8NGG2 359 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 OR13C5Q8NGS8 318 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 C11orf45Q8TAV5 145 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 CD99L2Q8TCZ2 262 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 RNASE8Q8TDE3 154 aaKnown RBP3.77□□□□□ -1.81
SMC4-224ENST00000494612 GPR148Q8TDV2 347 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 CASP10Q92851 521 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 SLCO2A1Q92959 643 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 EPSTI1Q96J88 318 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 CCDC43Q96MW1 224 aaKnown RBP3.77□□□□□ -1.81
SMC4-224ENST00000494612 ZNF300Q96RE9 604 aaPredicted RBP3.77□□□□□ -1.81
SMC4-224ENST00000494612 IWS1Q96ST2 819 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 HOXD1Q9GZZ0 328 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 UPF3AQ9H1J1 476 aaKnown RBP3.77□□□□□ -1.81
SMC4-224ENST00000494612 THEGQ9P2T0 379 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 LNPEPQ9UIQ6 1025 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 ETV7Q9Y603 341 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 C9orf84Q5VXU9 1444 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 LTBP4Q8N2S1 1624 aa3.77□□□□□ -1.81
SMC4-224ENST00000494612 MED1Q15648 1581 aaPredicted RBP3.76□□□□□ -1.81
SMC4-224ENST00000494612 ATP10AO60312 1499 aa3.76□□□□□ -1.81
SMC4-224ENST00000494612 IGLV7-46A0A075B6I9 117 aa3.76□□□□□ -1.81
SMC4-224ENST00000494612 AOC1P19801 751 aa3.76□□□□□ -1.81
SMC4-224ENST00000494612 FEN1P39748 380 aaKnown RBP3.76□□□□□ -1.81
SMC4-224ENST00000494612 IRX1P78414 480 aaPredicted RBP3.76□□□□□ -1.81
SMC4-224ENST00000494612 AP1B1Q10567 949 aa3.76□□□□□ -1.81
SMC4-224ENST00000494612 SRSF9Q13242 221 aaKnown RBP eCLIP3.76□□□□□ -1.81
SMC4-224ENST00000494612 AARDQ4LEZ3 155 aa3.76□□□□□ -1.81
SMC4-224ENST00000494612 ZNF789Q5FWF6 425 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms