RNA–Protein interactions for RNA: ENST00000493886.5

VCP-207, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 2,942 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-207ENST00000493886 TMBIM6P55061 237 aa13.19□□□□□ -0.3
VCP-207ENST00000493886 RAPSNQ13702 412 aa13.19□□□□□ -0.3
VCP-207ENST00000493886 SKIV2LQ15477 1246 aaKnown RBP13.19□□□□□ -0.3
VCP-207ENST00000493886 METRNLQ641Q3 311 aa13.19□□□□□ -0.3
VCP-207ENST00000493886 ERICH5Q6P6B1 374 aa13.19□□□□□ -0.3
VCP-207ENST00000493886 PTOV1Q86YD1 416 aa13.19□□□□□ -0.3
VCP-207ENST00000493886 ADHFE1Q8IWW8 467 aa13.19□□□□□ -0.3
VCP-207ENST00000493886 ZCCHC7Q8N3Z6 543 aaKnown RBP13.19□□□□□ -0.3
VCP-207ENST00000493886 SVOPLQ8N434 492 aa13.19□□□□□ -0.3
VCP-207ENST00000493886 WDR48Q8TAF3 677 aa13.19□□□□□ -0.3
VCP-207ENST00000493886 UBE2E3Q969T4 207 aa13.19□□□□□ -0.3
VCP-207ENST00000493886 MRPL38Q96DV4 380 aaKnown RBP13.19□□□□□ -0.3
VCP-207ENST00000493886 COX4I2Q96KJ9 171 aa13.19□□□□□ -0.3
VCP-207ENST00000493886 ACAT2Q9BWD1 397 aa13.19□□□□□ -0.3
VCP-207ENST00000493886 TEX101Q9BY14 249 aa13.19□□□□□ -0.3
VCP-207ENST00000493886 YTHDF1Q9BYJ9 559 aaKnown RBP13.19□□□□□ -0.3
VCP-207ENST00000493886 SAMD4AQ9UPU9 718 aaKnown RBP13.19□□□□□ -0.3
VCP-207ENST00000493886 OR1A2Q9Y585 309 aa13.19□□□□□ -0.3
VCP-207ENST00000493886 SNX5Q9Y5X3 404 aa13.19□□□□□ -0.3
VCP-207ENST00000493886 DNMT3AQ9Y6K1 912 aaPredicted RBP13.19□□□□□ -0.3
VCP-207ENST00000493886 hCG_2039718K7EN88 272 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 BCAS1O75363 584 aaPredicted RBP13.18□□□□□ -0.3
VCP-207ENST00000493886 CLPXO76031 633 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 HPRP00739 348 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 LAMP2P13473 410 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 IDUAP35475 653 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 PIK3CBP42338 1070 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 RAD23AP54725 363 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 MOGQ16653 247 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 CYP2A13Q16696 494 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 ZNF385BQ569K4 471 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 ATAT1Q5SQI0 421 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 OR5K2Q8NHB8 316 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.18□□□□□ -0.3
VCP-207ENST00000493886 CXorf40BQ96DE9 158 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 NRTNQ99748 197 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 RBM4BQ9BQ04 359 aaKnown RBP13.18□□□□□ -0.3
VCP-207ENST00000493886 DPH2Q9BQC3 489 aaPredicted RBP13.18□□□□□ -0.3
VCP-207ENST00000493886 TUBA1CQ9BQE3 449 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 UQCC2Q9BRT2 126 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 TRMT61BQ9BVS5 477 aaKnown RBP13.18□□□□□ -0.3
VCP-207ENST00000493886 RBM4Q9BWF3 364 aaKnown RBP13.18□□□□□ -0.3
VCP-207ENST00000493886 REEP4Q9H6H4 257 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 TRNAU1APQ9NX07 287 aaKnown RBP13.18□□□□□ -0.3
VCP-207ENST00000493886 TMEM9Q9P0T7 183 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 ATP6V1HQ9UI12 483 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 ATG2BQ96BY7 2078 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 ANKRD34BA5PLL1 514 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 FAM47E-STBD1D6RA91 191 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 KMOO15229 486 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 RPN2P04844 631 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 GSTM2P28161 218 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 TIE1P35590 1138 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 SEC13P55735 322 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 CD300CQ08708 224 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 GRSF1Q12849 480 aaKnown RBP eCLIP13.18□□□□□ -0.3
VCP-207ENST00000493886 AGERQ15109 404 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 IRF4Q15306 451 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 IGSF11Q5DX21 431 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 GTF2IRD2BQ6EKJ0 949 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 TMIGD1Q6UXZ0 262 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 GTF2IRD2Q86UP8 949 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 IGFN1Q86VF2 1251 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 PGBD3Q8N328 593 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 METTL4Q8N3J2 472 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 HDAC2Q92769 488 aaKnown RBP13.18□□□□□ -0.3
VCP-207ENST00000493886 WDR26Q9H7D7 661 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 MSRAQ9UJ68 235 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 ABCG2Q9UNQ0 655 aa13.18□□□□□ -0.3
VCP-207ENST00000493886 ZFR2Q9UPR6 939 aaKnown RBP13.18□□□□□ -0.3
VCP-207ENST00000493886 RANBP2P49792 3224 aaKnown RBP13.18□□□□□ -0.3
VCP-207ENST00000493886 C1orf226A1L170 272 aa13.17□□□□□ -0.3
VCP-207ENST00000493886 RNASET2O00584 256 aaKnown RBP13.17□□□□□ -0.3
VCP-207ENST00000493886 BCKDKO14874 412 aa13.17□□□□□ -0.3
VCP-207ENST00000493886 PAK4O96013 591 aaPredicted RBP13.17□□□□□ -0.3
VCP-207ENST00000493886 ERGP11308 486 aa13.17□□□□□ -0.3
VCP-207ENST00000493886 GP2P55259 537 aaKnown RBP13.17□□□□□ -0.3
VCP-207ENST00000493886 FGL2Q14314 439 aa13.17□□□□□ -0.3
VCP-207ENST00000493886 SMN1Q16637 294 aaKnown RBP13.17□□□□□ -0.3
VCP-207ENST00000493886 RBM48Q5RL73 367 aaKnown RBP13.17□□□□□ -0.3
VCP-207ENST00000493886 IER5LQ5T953 404 aa13.17□□□□□ -0.3
VCP-207ENST00000493886 SIGIRRQ6IA17 410 aa13.17□□□□□ -0.3
VCP-207ENST00000493886 SLC16A12Q6ZSM3 486 aa13.17□□□□□ -0.3
VCP-207ENST00000493886 FAM129CQ86XR2 697 aa13.17□□□□□ -0.3
VCP-207ENST00000493886 KRT78Q8N1N4 520 aa13.17□□□□□ -0.3
VCP-207ENST00000493886 NATD1Q8N6N6 113 aa13.17□□□□□ -0.3
VCP-207ENST00000493886 ABHD11Q8NFV4 315 aa13.17□□□□□ -0.3
VCP-207ENST00000493886 KLK6Q92876 244 aa13.17□□□□□ -0.3
VCP-207ENST00000493886 NODALQ96S42 347 aa13.17□□□□□ -0.3
VCP-207ENST00000493886 BHLHE41Q9C0J9 482 aaPredicted RBP13.17□□□□□ -0.3
VCP-207ENST00000493886 SLC28A3Q9HAS3 691 aa13.17□□□□□ -0.3
VCP-207ENST00000493886 FZD4Q9ULV1 537 aa13.17□□□□□ -0.3
VCP-207ENST00000493886 PCP4L1A6NKN8 68 aa13.17□□□□□ -0.3
VCP-207ENST00000493886 TCEA1P23193 301 aaKnown RBP13.17□□□□□ -0.3
VCP-207ENST00000493886 KDELR2P33947 212 aa13.17□□□□□ -0.3
VCP-207ENST00000493886 MLLT3P42568 568 aaPredicted RBP13.17□□□□□ -0.3
VCP-207ENST00000493886 MAGEA2P43356 314 aa13.17□□□□□ -0.3
VCP-207ENST00000493886 EIF2B2P49770 351 aaKnown RBP13.17□□□□□ -0.3
VCP-207ENST00000493886 ISL1P61371 349 aa13.17□□□□□ -0.3
VCP-207ENST00000493886 GAB1Q13480 694 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms