RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 MCCC2Q9HCC0 563 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 TMEM248Q9NWD8 314 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 DHRS7Q9Y394 339 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 CDH10Q9Y6N8 788 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 HCN1O60741 890 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 DPM1O60762 260 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 LGI1O95970 557 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 EBLN1P0CF75 366 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 OR1E1P30953 314 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 ADCYAP1R1P41586 468 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 CTBP2P56545 445 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 WNT3P56703 355 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 IL10RBQ08334 325 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 SERINC3Q13530 473 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 RIN1Q13671 783 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 VEZF1Q14119 521 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 TAF1AQ15573 450 aaPredicted RBP11.22□□□□□ -0.61
HDAC4-210ENST00000493582 KLHL22Q53GT1 634 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 BCL2L15Q5TBC7 163 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 GPR139Q6DWJ6 353 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 FBXL22Q6P050 247 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 USP30Q70CQ3 517 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 NAGSQ8N159 534 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 CEP76Q8TAP6 659 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 PPA2Q9H2U2 334 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 PCDHGC4Q9Y5F7 938 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 PRAMEF33A0A0G2JMD5 474 aa11.21□□□□□ -0.61
HDAC4-210ENST00000493582 CASTOR2A6NHX0 329 aa11.21□□□□□ -0.61
HDAC4-210ENST00000493582 PRAMEF10O60809 474 aa11.21□□□□□ -0.61
HDAC4-210ENST00000493582 SCN2BO60939 215 aa11.21□□□□□ -0.61
HDAC4-210ENST00000493582 SOX14O95416 240 aa11.21□□□□□ -0.61
HDAC4-210ENST00000493582 MPC2O95563 127 aa11.21□□□□□ -0.61
HDAC4-210ENST00000493582 TBX18O95935 607 aa11.21□□□□□ -0.61
HDAC4-210ENST00000493582 CFDP00746 253 aaPredicted RBP11.21□□□□□ -0.61
HDAC4-210ENST00000493582 TPOP07202 933 aa11.21□□□□□ -0.61
HDAC4-210ENST00000493582 SYPP08247 313 aa11.21□□□□□ -0.61
HDAC4-210ENST00000493582 SRP54P61011 504 aaKnown RBP11.21□□□□□ -0.61
HDAC4-210ENST00000493582 UGT8Q16880 541 aa11.21□□□□□ -0.61
HDAC4-210ENST00000493582 DDX53Q86TM3 631 aaKnown RBP11.21□□□□□ -0.61
HDAC4-210ENST00000493582 MICALL2Q8IY33 904 aa11.21□□□□□ -0.61
HDAC4-210ENST00000493582 ZNF683Q8IZ20 524 aa11.21□□□□□ -0.61
HDAC4-210ENST00000493582 ZNF655Q8N720 491 aaPredicted RBP11.21□□□□□ -0.61
HDAC4-210ENST00000493582 KLHL6Q8WZ60 621 aa11.21□□□□□ -0.61
HDAC4-210ENST00000493582 MYEOVQ96EZ4 313 aa11.21□□□□□ -0.61
HDAC4-210ENST00000493582 KLHL15Q96M94 604 aa11.21□□□□□ -0.61
HDAC4-210ENST00000493582 TMEM43Q9BTV4 400 aa11.21□□□□□ -0.61
HDAC4-210ENST00000493582 MED28Q9H204 178 aa11.21□□□□□ -0.61
HDAC4-210ENST00000493582 RDH8Q9NYR8 311 aa11.21□□□□□ -0.61
HDAC4-210ENST00000493582 RALGAPA2Q2PPJ7 1873 aa11.21□□□□□ -0.61
HDAC4-210ENST00000493582 A0A0D9SEW6 157 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.21□□□□□ -0.62
HDAC4-210ENST00000493582 PPM1BO75688 479 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 CLDN9O95484 217 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 PRAMEF1O95521 474 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 HMBSP08397 361 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 ZNF865P0CJ78 1059 aaPredicted RBP11.21□□□□□ -0.62
HDAC4-210ENST00000493582 PRPS2P11908 318 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 LPOP22079 712 aaPredicted RBP11.21□□□□□ -0.62
HDAC4-210ENST00000493582 ALDH9A1P49189 494 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 CLCNKAP51800 687 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 CRISP1P54107 249 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 TIGD5Q53EQ6 642 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 SDHAF4Q5VUM1 108 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 MFSD14CQ5VZR4 134 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 DLK2Q6UY11 383 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 CFAP77Q6ZQR2 320 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 GPAT4Q86UL3 456 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 LAS2Q8IYD9 372 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 GHDCQ8N2G8 530 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 STK40Q8N2I9 435 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 LRRC17Q8N6Y2 441 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 NANOGP1Q8N7R0 232 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 OR11H7Q8NGC8 314 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 DNAJB3Q8WWF6 145 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 SORCS2Q96PQ0 1159 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 FAM193BQ96PV7 902 aaPredicted RBP11.21□□□□□ -0.62
HDAC4-210ENST00000493582 TCF25Q9BQ70 676 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 NTMT1Q9BV86 223 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 KATNAL1Q9BW62 490 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 PIGUQ9H490 435 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 SLC25A19Q9HC21 320 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 NCKAP1Q9Y2A7 1128 aa11.21□□□□□ -0.62
HDAC4-210ENST00000493582 SPIN1Q9Y657 262 aaPredicted RBP11.21□□□□□ -0.62
HDAC4-210ENST00000493582 ZAR1LA6NP61 321 aa11.2□□□□□ -0.62
HDAC4-210ENST00000493582 LZTS3O60299 673 aaPredicted RBP11.2□□□□□ -0.62
HDAC4-210ENST00000493582 IGHA2P01877 340 aa11.2□□□□□ -0.62
HDAC4-210ENST00000493582 HLA-DQB1P01920 261 aa11.2□□□□□ -0.62
HDAC4-210ENST00000493582 RRASP10301 218 aa11.2□□□□□ -0.62
HDAC4-210ENST00000493582 LAMP1P11279 417 aa11.2□□□□□ -0.62
HDAC4-210ENST00000493582 COX7A2P14406 83 aa11.2□□□□□ -0.62
HDAC4-210ENST00000493582 CXCL3P19876 107 aa11.2□□□□□ -0.62
HDAC4-210ENST00000493582 SDHBP21912 280 aa11.2□□□□□ -0.62
HDAC4-210ENST00000493582 NNMTP40261 264 aa11.2□□□□□ -0.62
HDAC4-210ENST00000493582 AVPR1BP47901 424 aa11.2□□□□□ -0.62
HDAC4-210ENST00000493582 ZNF81P51508 661 aa11.2□□□□□ -0.62
HDAC4-210ENST00000493582 CLCN4P51793 760 aa11.2□□□□□ -0.62
HDAC4-210ENST00000493582 KLHL12Q53G59 568 aa11.2□□□□□ -0.62
HDAC4-210ENST00000493582 ZNF730Q6ZMV8 503 aa11.2□□□□□ -0.62
HDAC4-210ENST00000493582 ASB18Q6ZVZ8 466 aa11.2□□□□□ -0.62
HDAC4-210ENST00000493582 TMEM86AQ8N2M4 240 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms