RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 E2F3O00716 465 aa23.15■■□□□ 1.3
UPF3A-209ENST00000492270 WDPCPO95876 746 aa23.15■■□□□ 1.3
UPF3A-209ENST00000492270 TGFB1P01137 390 aa23.15■■□□□ 1.3
UPF3A-209ENST00000492270 SNRPAP09012 282 aaKnown RBP23.15■■□□□ 1.3
UPF3A-209ENST00000492270 RBP1P09455 135 aa23.15■■□□□ 1.3
UPF3A-209ENST00000492270 EEF1DP29692 281 aaKnown RBP23.15■■□□□ 1.3
UPF3A-209ENST00000492270 ST13P50502 369 aaKnown RBP23.15■■□□□ 1.3
UPF3A-209ENST00000492270 SLC26A5P58743 744 aa23.15■■□□□ 1.3
UPF3A-209ENST00000492270 ZNF33BQ06732 778 aa23.15■■□□□ 1.3
UPF3A-209ENST00000492270 SRSF1Q07955 248 aaKnown RBP eCLIP23.15■■□□□ 1.33e-6■□□□□ 11.2
UPF3A-209ENST00000492270 DDX39BQ13838 428 aaKnown RBP23.15■■□□□ 1.3
UPF3A-209ENST00000492270 TLR1Q15399 786 aa23.15■■□□□ 1.3
UPF3A-209ENST00000492270 TSNAXIP1Q2TAA8 658 aa23.15■■□□□ 1.3
UPF3A-209ENST00000492270 TEX35Q5T0J7 233 aa23.15■■□□□ 1.3
UPF3A-209ENST00000492270 ZNF793Q6ZN11 406 aa23.15■■□□□ 1.3
UPF3A-209ENST00000492270 M1APQ8TC57 530 aa23.15■■□□□ 1.3
UPF3A-209ENST00000492270 UBE2E3Q969T4 207 aa23.15■■□□□ 1.3
UPF3A-209ENST00000492270 SERINC2Q96SA4 455 aa23.15■■□□□ 1.3
UPF3A-209ENST00000492270 ACTR8Q9H981 624 aa23.15■■□□□ 1.3
UPF3A-209ENST00000492270 KCNK13Q9HB14 408 aa23.15■■□□□ 1.3
UPF3A-209ENST00000492270 DOPEY2Q9Y3R5 2298 aa23.14■■□□□ 1.29
UPF3A-209ENST00000492270 A0A088AWK7 358 aa23.14■■□□□ 1.29
UPF3A-209ENST00000492270 DYTNA2CJ06 578 aa23.14■■□□□ 1.29
UPF3A-209ENST00000492270 A8MUA0 341 aa23.14■■□□□ 1.29
UPF3A-209ENST00000492270 TGFBR3LH3BV60 316 aa23.14■■□□□ 1.29
UPF3A-209ENST00000492270 SAP18O00422 153 aaKnown RBP23.14■■□□□ 1.29
UPF3A-209ENST00000492270 ZNF10P21506 573 aaPredicted RBP23.14■■□□□ 1.29
UPF3A-209ENST00000492270 HPDP32754 393 aaPredicted RBP23.14■■□□□ 1.29
UPF3A-209ENST00000492270 TSFMP43897 325 aaKnown RBP23.14■■□□□ 1.29
UPF3A-209ENST00000492270 MTTPP55157 894 aa23.14■■□□□ 1.29
UPF3A-209ENST00000492270 LIM2P55344 173 aa23.14■■□□□ 1.29
UPF3A-209ENST00000492270 MRPL49Q13405 166 aaKnown RBP23.14■■□□□ 1.29
UPF3A-209ENST00000492270 SLC29A2Q14542 456 aa23.14■■□□□ 1.29
UPF3A-209ENST00000492270 EXT1Q16394 746 aa23.14■■□□□ 1.29
UPF3A-209ENST00000492270 ADGRD1Q6QNK2 874 aa23.14■■□□□ 1.29
UPF3A-209ENST00000492270 OR1N1Q8NGS0 311 aa23.14■■□□□ 1.29
UPF3A-209ENST00000492270 NPAS2Q99743 824 aa23.14■■□□□ 1.29
UPF3A-209ENST00000492270 IPPKQ9H8X2 491 aa23.14■■□□□ 1.29
UPF3A-209ENST00000492270 MMP25Q9NPA2 562 aa23.14■■□□□ 1.29
UPF3A-209ENST00000492270 COPG1Q9Y678 874 aaKnown RBP23.14■■□□□ 1.29
UPF3A-209ENST00000492270 MAN1A2O60476 641 aa23.13■■□□□ 1.29
UPF3A-209ENST00000492270 SBK3P0C264 359 aa23.13■■□□□ 1.29
UPF3A-209ENST00000492270 COL6A2P12110 1019 aa23.13■■□□□ 1.29
UPF3A-209ENST00000492270 TNFSF10P50591 281 aa23.13■■□□□ 1.29
UPF3A-209ENST00000492270 ABHD17BQ5VST6 288 aa23.13■■□□□ 1.29
UPF3A-209ENST00000492270 H3F3CQ6NXT2 135 aa23.13■■□□□ 1.29
UPF3A-209ENST00000492270 CRLF3Q8IUI8 442 aa23.13■■□□□ 1.29
UPF3A-209ENST00000492270 SCUBE1Q8IWY4 988 aa23.13■■□□□ 1.29
UPF3A-209ENST00000492270 KIF2BQ8N4N8 673 aa23.13■■□□□ 1.29
UPF3A-209ENST00000492270 HUS1BQ8NHY5 278 aa23.13■■□□□ 1.29
UPF3A-209ENST00000492270 HAS2Q92819 552 aa23.13■■□□□ 1.29
UPF3A-209ENST00000492270 NSUN5Q96P11 429 aaKnown RBP23.13■■□□□ 1.29
UPF3A-209ENST00000492270 KCNC2Q96PR1 638 aa23.13■■□□□ 1.29
UPF3A-209ENST00000492270 OR51B5Q9H339 312 aa23.13■■□□□ 1.29
UPF3A-209ENST00000492270 PRTFDC1Q9NRG1 225 aa23.13■■□□□ 1.29
UPF3A-209ENST00000492270 DAPP1Q9UN19 280 aa23.13■■□□□ 1.29
UPF3A-209ENST00000492270 RNF11Q9Y3C5 154 aa23.13■■□□□ 1.29
UPF3A-209ENST00000492270 MMACHCQ9Y4U1 282 aa23.13■■□□□ 1.29
UPF3A-209ENST00000492270 CLDN16Q9Y5I7 305 aa23.13■■□□□ 1.29
UPF3A-209ENST00000492270 TNPO3Q9Y5L0 923 aaKnown RBP23.13■■□□□ 1.29
UPF3A-209ENST00000492270 CLEC18AA5D8T8 446 aa23.12■■□□□ 1.29
UPF3A-209ENST00000492270 OR7A17O14581 309 aa23.12■■□□□ 1.29
UPF3A-209ENST00000492270 PPP2R1BP30154 601 aa23.12■■□□□ 1.29
UPF3A-209ENST00000492270 TGM3Q08188 693 aa23.12■■□□□ 1.29
UPF3A-209ENST00000492270 NR6A1Q15406 480 aa23.12■■□□□ 1.29
UPF3A-209ENST00000492270 LIPJQ5W064 366 aa23.12■■□□□ 1.29
UPF3A-209ENST00000492270 CLEC18BQ6UXF7 455 aa23.12■■□□□ 1.29
UPF3A-209ENST00000492270 RPS27LQ71UM5 84 aaKnown RBP23.12■■□□□ 1.29
UPF3A-209ENST00000492270 CLNKQ7Z7G1 428 aa23.12■■□□□ 1.29
UPF3A-209ENST00000492270 BEST3Q8N1M1 668 aa23.12■■□□□ 1.29
UPF3A-209ENST00000492270 CLEC18CQ8NCF0 446 aa23.12■■□□□ 1.29
UPF3A-209ENST00000492270 CDK15Q96Q40 435 aa23.12■■□□□ 1.29
UPF3A-209ENST00000492270 MTERF1Q99551 399 aaKnown RBP23.12■■□□□ 1.29
UPF3A-209ENST00000492270 SORBS1Q9BX66 1292 aaKnown RBP23.12■■□□□ 1.29
UPF3A-209ENST00000492270 SLC29A3Q9BZD2 475 aa23.12■■□□□ 1.29
UPF3A-209ENST00000492270 DMRT3Q9NQL9 472 aa23.12■■□□□ 1.29
UPF3A-209ENST00000492270 STMN3Q9NZ72 180 aa23.12■■□□□ 1.29
UPF3A-209ENST00000492270 FLNBO75369 2602 aaKnown RBP23.12■■□□□ 1.29
UPF3A-209ENST00000492270 SVILO95425 2214 aa23.11■■□□□ 1.29
UPF3A-209ENST00000492270 SAGE2PA6NJ88 616 aa23.11■■□□□ 1.29
UPF3A-209ENST00000492270 CYR61O00622 381 aa23.11■■□□□ 1.29
UPF3A-209ENST00000492270 ATP5A1P25705 553 aaKnown RBP23.11■■□□□ 1.29
UPF3A-209ENST00000492270 CPSF6Q16630 551 aaKnown RBP eCLIP23.11■■□□□ 1.29
UPF3A-209ENST00000492270 ACER2Q5QJU3 275 aa23.11■■□□□ 1.29
UPF3A-209ENST00000492270 KHDRBS2Q5VWX1 349 aaKnown RBP23.11■■□□□ 1.29
UPF3A-209ENST00000492270 TMEM151AQ8N4L1 468 aa23.11■■□□□ 1.29
UPF3A-209ENST00000492270 ACOT4Q8N9L9 421 aa23.11■■□□□ 1.29
UPF3A-209ENST00000492270 NFAM1Q8NET5 270 aaPredicted RBP23.11■■□□□ 1.29
UPF3A-209ENST00000492270 OR52B6Q8NGF0 335 aa23.11■■□□□ 1.29
UPF3A-209ENST00000492270 ELP5Q8TE02 316 aa23.11■■□□□ 1.29
UPF3A-209ENST00000492270 CMTM7Q96FZ5 175 aa23.11■■□□□ 1.29
UPF3A-209ENST00000492270 BARD1Q99728 777 aaKnown RBP23.11■■□□□ 1.29
UPF3A-209ENST00000492270 MAPKAP1Q9BPZ7 522 aa23.11■■□□□ 1.29
UPF3A-209ENST00000492270 MRPL57Q9BQC6 102 aaKnown RBP23.11■■□□□ 1.29
UPF3A-209ENST00000492270 TBCDQ9BTW9 1192 aa23.11■■□□□ 1.29
UPF3A-209ENST00000492270 RNF32Q9H0A6 362 aa23.11■■□□□ 1.29
UPF3A-209ENST00000492270 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP23.11■■□□□ 1.29
UPF3A-209ENST00000492270 MRPL46Q9H2W6 279 aaKnown RBP23.11■■□□□ 1.29
UPF3A-209ENST00000492270 NOL11Q9H8H0 719 aaKnown RBP23.11■■□□□ 1.29
UPF3A-209ENST00000492270 KCMF1Q9P0J7 381 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms