RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 LMF1Q96S06 567 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 OR51B5Q9H339 312 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 EPS8L2Q9H6S3 715 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 NOL11Q9H8H0 719 aaKnown RBP17.01■□□□□ 0.31
COL9A3-214ENST00000490398 IPPKQ9H8X2 491 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 ANKZF1Q9H8Y5 726 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 CLK4Q9HAZ1 481 aaKnown RBP17.01■□□□□ 0.31
COL9A3-214ENST00000490398 ZBTB26Q9HCK0 441 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 ASF1BQ9NVP2 202 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 TMEM216Q9P0N5 145 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 ANGPTL3Q9Y5C1 460 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 SETXQ7Z333 2677 aaKnown RBP17.01■□□□□ 0.31
COL9A3-214ENST00000490398 SCN2AQ99250 2005 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 NBPF19A0A087WUL8 3843 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 TCRBV16S1A1N1A0A5B0 115 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 GOLGA8RI6L899 631 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 PSMD12O00232 456 aaPredicted RBP17■□□□□ 0.31
COL9A3-214ENST00000490398 PPP6CO00743 305 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 B3GALT2O43825 422 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 ETHE1O95571 254 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 WDPCPO95876 746 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 RBP1P09455 135 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 COL6A2P12110 1019 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 JAK1P23458 1154 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 NEK2P51955 445 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 LIM2P55344 173 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 RAB38P57729 211 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 SLC26A5P58743 744 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 ACTN3Q08043 901 aaPredicted RBP17■□□□□ 0.31
COL9A3-214ENST00000490398 TRIM40Q6P9F5 258 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 SCUBE1Q8IWY4 988 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 CYP4X1Q8N118 509 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 NFAM1Q8NET5 270 aaPredicted RBP17■□□□□ 0.31
COL9A3-214ENST00000490398 MTERF1Q99551 399 aaKnown RBP17■□□□□ 0.31
COL9A3-214ENST00000490398 MAPKAP1Q9BPZ7 522 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 NPLQ9BXD5 320 aaPredicted RBP17■□□□□ 0.31
COL9A3-214ENST00000490398 ACTR8Q9H981 624 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 PRDM9Q9NQV7 894 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 KCMF1Q9P0J7 381 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 MAP10Q9P2G4 905 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 TBK1Q9UHD2 729 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 PCTPQ9UKL6 214 aa17■□□□□ 0.31
COL9A3-214ENST00000490398 SHANK1Q9Y566 2161 aa16.99■□□□□ 0.31
COL9A3-214ENST00000490398 A8MT66 165 aa16.99■□□□□ 0.31
COL9A3-214ENST00000490398 TCP11X1B4DZS4 312 aa16.99■□□□□ 0.31
COL9A3-214ENST00000490398 CYR61O00622 381 aa16.99■□□□□ 0.31
COL9A3-214ENST00000490398 TSPAN8P19075 237 aa16.99■□□□□ 0.31
COL9A3-214ENST00000490398 ATP5A1P25705 553 aaKnown RBP16.99■□□□□ 0.31
COL9A3-214ENST00000490398 MTTPP55157 894 aa16.99■□□□□ 0.31
COL9A3-214ENST00000490398 RPS13P62277 151 aaKnown RBP16.99■□□□□ 0.31
COL9A3-214ENST00000490398 MRPL49Q13405 166 aaKnown RBP16.99■□□□□ 0.31
COL9A3-214ENST00000490398 CPSF6Q16630 551 aaKnown RBP eCLIP16.99■□□□□ 0.31
COL9A3-214ENST00000490398 TSNAXIP1Q2TAA8 658 aa16.99■□□□□ 0.31
COL9A3-214ENST00000490398 CRLF3Q8IUI8 442 aa16.99■□□□□ 0.31
COL9A3-214ENST00000490398 IQCKQ8N0W5 287 aa16.99■□□□□ 0.31
COL9A3-214ENST00000490398 M1APQ8TC57 530 aa16.99■□□□□ 0.31
COL9A3-214ENST00000490398 UBE2E3Q969T4 207 aa16.99■□□□□ 0.31
COL9A3-214ENST00000490398 SERINC2Q96SA4 455 aa16.99■□□□□ 0.31
COL9A3-214ENST00000490398 LPAR4Q99677 370 aa16.99■□□□□ 0.31
COL9A3-214ENST00000490398 MRPL57Q9BQC6 102 aaKnown RBP16.99■□□□□ 0.31
COL9A3-214ENST00000490398 MRPL46Q9H2W6 279 aaKnown RBP16.99■□□□□ 0.31
COL9A3-214ENST00000490398 DMRT3Q9NQL9 472 aa16.99■□□□□ 0.31
COL9A3-214ENST00000490398 DAPP1Q9UN19 280 aa16.99■□□□□ 0.31
COL9A3-214ENST00000490398 FLNBO75369 2602 aaKnown RBP16.99■□□□□ 0.31
COL9A3-214ENST00000490398 A0A1W2PPM1 405 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 ICAM2P13598 275 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 CDH13P55290 713 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 ARG2P78540 354 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 SRSF11Q05519 484 aaKnown RBP16.98■□□□□ 0.31
COL9A3-214ENST00000490398 ZNF33BQ06732 778 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 TRAF3Q13114 568 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 ZNF169Q14929 603 aaPredicted RBP16.98■□□□□ 0.31
COL9A3-214ENST00000490398 DEPDC1Q5TB30 811 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 KHDRBS2Q5VWX1 349 aaKnown RBP16.98■□□□□ 0.31
COL9A3-214ENST00000490398 LIPJQ5W064 366 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 H3F3CQ6NXT2 135 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 CLNKQ7Z7G1 428 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 EFCAB3Q8N7B9 438 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 ACOT4Q8N9L9 421 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 L3MBTL4Q8NA19 623 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 OR1N1Q8NGS0 311 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 WDR20Q8TBZ3 569 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 ELP5Q8TE02 316 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 KCNC2Q96PR1 638 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 KCNK13Q9HB14 408 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 PRM3Q9NNZ6 103 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 MMP25Q9NPA2 562 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 PRTFDC1Q9NRG1 225 aa16.98■□□□□ 0.31
COL9A3-214ENST00000490398 TNPO3Q9Y5L0 923 aaKnown RBP16.98■□□□□ 0.31
COL9A3-214ENST00000490398 H0YIV9 168 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 STX16-NPEPL1H3BU86 382 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 STX16O14662 325 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 SMIM24O75264 130 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 UQCRHP07919 91 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 RPS17P08708 135 aaKnown RBP16.97■□□□□ 0.31
COL9A3-214ENST00000490398 PYGBP11216 843 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 HIST1H1TP22492 207 aaPredicted RBP16.97■□□□□ 0.31
COL9A3-214ENST00000490398 TNFRSF8P28908 595 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 TNFSF10P50591 281 aa16.97■□□□□ 0.31
COL9A3-214ENST00000490398 ZRSR2Q15696 482 aaKnown RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms