RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 PEX1O43933 1283 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 CDC40O60508 579 aaKnown RBP eCLIP17.16■□□□□ 0.34
HDAC6-231ENST00000488905 TPOP07202 933 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 C1GALT1C1LP0DN25 315 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 PPP2R1BP30154 601 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 SSR4P51571 173 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 HNRNPFP52597 415 aaKnown RBP17.16■□□□□ 0.34
HDAC6-231ENST00000488905 ARL4CP56559 192 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 HSD17B7P56937 341 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 TAS2R39P59534 338 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 GPR85P60893 370 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 MGAT5Q09328 741 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 RUNX2Q13950 521 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 C18orf21Q32NC0 220 aaPredicted RBP17.16■□□□□ 0.34
HDAC6-231ENST00000488905 TMIGD1Q6UXZ0 262 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 SLCO4C1Q6ZQN7 724 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 SYDE1Q6ZW31 735 aaPredicted RBP17.16■□□□□ 0.34
HDAC6-231ENST00000488905 MDGA2Q7Z553 956 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 ANKMY2Q8IV38 441 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 FAM47BQ8NA70 645 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 ZFP62Q8NB50 900 aaPredicted RBP17.16■□□□□ 0.34
HDAC6-231ENST00000488905 CHTF18Q8WVB6 975 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 ANKRD49Q8WVL7 239 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 CCT6BQ92526 530 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 RHBDF1Q96CC6 855 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 MS4A6EQ96DS6 147 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 CCDC77Q9BR77 488 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 ENKD1Q9H0I2 346 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 ADAP2Q9NPF8 381 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 PRTFDC1Q9NRG1 225 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 CTNNAL1Q9UBT7 734 aa17.16■□□□□ 0.34
HDAC6-231ENST00000488905 MRPS33Q9Y291 106 aaKnown RBP17.16■□□□□ 0.34
HDAC6-231ENST00000488905 SPG11Q96JI7 2443 aa17.15■□□□□ 0.34
HDAC6-231ENST00000488905 A0A088AWK7 358 aa17.15■□□□□ 0.34
HDAC6-231ENST00000488905 LRIT2A6NDA9 550 aa17.15■□□□□ 0.34
HDAC6-231ENST00000488905 B3GALT2O43825 422 aa17.15■□□□□ 0.34
HDAC6-231ENST00000488905 TCP1P17987 556 aaKnown RBP17.15■□□□□ 0.34
HDAC6-231ENST00000488905 ZNF10P21506 573 aaPredicted RBP17.15■□□□□ 0.34
HDAC6-231ENST00000488905 GDF5P43026 501 aa17.15■□□□□ 0.34
HDAC6-231ENST00000488905 GPR143P51810 404 aa17.15■□□□□ 0.34
HDAC6-231ENST00000488905 KRTAP10-9P60411 292 aa17.15■□□□□ 0.34
HDAC6-231ENST00000488905 SLC13A2Q13183 592 aa17.15■□□□□ 0.34
HDAC6-231ENST00000488905 FASTKD3Q14CZ7 662 aaKnown RBP17.15■□□□□ 0.34
HDAC6-231ENST00000488905 MEX3BQ6ZN04 569 aaKnown RBP17.15■□□□□ 0.34
HDAC6-231ENST00000488905 KRT78Q8N1N4 520 aa17.15■□□□□ 0.34
HDAC6-231ENST00000488905 MARVELD2Q8N4S9 558 aa17.15■□□□□ 0.34
HDAC6-231ENST00000488905 TMEM52Q8NDY8 209 aa17.15■□□□□ 0.34
HDAC6-231ENST00000488905 SEC16BQ96JE7 1060 aa17.15■□□□□ 0.34
HDAC6-231ENST00000488905 TREX2Q9BQ50 279 aaPredicted RBP17.15■□□□□ 0.34
HDAC6-231ENST00000488905 TIMMDC1Q9NPL8 285 aa17.15■□□□□ 0.34
HDAC6-231ENST00000488905 PLSCR2Q9NRY7 297 aa17.15■□□□□ 0.34
HDAC6-231ENST00000488905 ITGB1BP2Q9UKP3 347 aa17.15■□□□□ 0.34
HDAC6-231ENST00000488905 YARS2Q9Y2Z4 477 aaKnown RBP17.15■□□□□ 0.34
HDAC6-231ENST00000488905 NCF1BA6NI72 391 aaPredicted RBP17.14■□□□□ 0.33
HDAC6-231ENST00000488905 NCF1CA8MVU1 366 aaPredicted RBP17.14■□□□□ 0.33
HDAC6-231ENST00000488905 CLDN4O14493 209 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 PRKNO60260 465 aaPredicted RBP17.14■□□□□ 0.33
HDAC6-231ENST00000488905 H2AFYO75367 372 aaKnown RBP17.14■□□□□ 0.33
HDAC6-231ENST00000488905 CLEC3AO75596 197 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 SEC31AO94979 1220 aaKnown RBP17.14■□□□□ 0.33
HDAC6-231ENST00000488905 TUBB4AP04350 444 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 NCF1P14598 390 aaPredicted RBP17.14■□□□□ 0.33
HDAC6-231ENST00000488905 DR1Q01658 176 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 TLE4Q04727 773 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 ADPRMQ3LIE5 342 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 ARHGAP11AQ6P4F7 1023 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 KLHL7Q8IXQ5 586 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 ZNF595Q8IYB9 648 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 PSD4Q8NDX1 1056 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 FBXO36Q8NEA4 188 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 OR2L5Q8NG80 312 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 VPS39Q96JC1 886 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 RUNDC3BQ96NL0 473 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 QRFPRQ96P65 431 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 CSF3RQ99062 836 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 TMEM79Q9BSE2 394 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 PITHD1Q9GZP4 211 aaPredicted RBP17.14■□□□□ 0.33
HDAC6-231ENST00000488905 RHOJQ9H4E5 214 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 POPDC3Q9HBV1 291 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 GPRC5BQ9NZH0 403 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 KCMF1Q9P0J7 381 aa17.14■□□□□ 0.33
HDAC6-231ENST00000488905 SETD2Q9BYW2 2564 aaPredicted RBP17.13■□□□□ 0.33
HDAC6-231ENST00000488905 SYNDIG1LA6NDD5 238 aa17.13■□□□□ 0.33
HDAC6-231ENST00000488905 TMEM200CA6NKL6 621 aa17.13■□□□□ 0.33
HDAC6-231ENST00000488905 A8MVJ9 347 aa17.13■□□□□ 0.33
HDAC6-231ENST00000488905 ZSCAN12O43309 604 aa17.13■□□□□ 0.33
HDAC6-231ENST00000488905 ZFAND5O76080 213 aa17.13■□□□□ 0.33
HDAC6-231ENST00000488905 TBX6O95947 436 aaPredicted RBP17.13■□□□□ 0.33
HDAC6-231ENST00000488905 CAPN3P20807 821 aa17.13■□□□□ 0.33
HDAC6-231ENST00000488905 CERS1P27544 350 aa17.13■□□□□ 0.33
HDAC6-231ENST00000488905 HPDP32754 393 aaPredicted RBP17.13■□□□□ 0.33
HDAC6-231ENST00000488905 PLA2G16P53816 162 aa17.13■□□□□ 0.33
HDAC6-231ENST00000488905 RIPPLY3P57055 190 aa17.13■□□□□ 0.33
HDAC6-231ENST00000488905 TGFBIQ15582 683 aa17.13■□□□□ 0.33
HDAC6-231ENST00000488905 ELAVL1Q15717 326 aaKnown RBP17.13■□□□□ 0.33
HDAC6-231ENST00000488905 TRIM40Q6P9F5 258 aa17.13■□□□□ 0.33
HDAC6-231ENST00000488905 C16orf47Q6ZP98 133 aaPredicted RBP17.13■□□□□ 0.33
HDAC6-231ENST00000488905 VN1R5Q7Z5H4 357 aa17.13■□□□□ 0.33
HDAC6-231ENST00000488905 CLNKQ7Z7G1 428 aa17.13■□□□□ 0.33
HDAC6-231ENST00000488905 GPALPP1Q8IXQ4 340 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms