RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 EXD2Q9NVH0 621 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 TRNAU1APQ9NX07 287 aaKnown RBP11.61□□□□□ -0.55
HDAC6-230ENST00000488543 PCOLCE2Q9UKZ9 415 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 CABIN1Q9Y6J0 2220 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 H3BMQ9 156 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 H7BY64 318 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 SAP18O00422 153 aaKnown RBP11.61□□□□□ -0.55
HDAC6-230ENST00000488543 SCAMP2O15127 329 aaKnown RBP11.61□□□□□ -0.55
HDAC6-230ENST00000488543 ERN1O75460 977 aaKnown RBP11.61□□□□□ -0.55
HDAC6-230ENST00000488543 IL7RP16871 459 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 JUNDP17535 347 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 SLC19A1P41440 591 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 KIR3DL1P43629 444 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 CSNK1G2P78368 415 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 SRSF11Q05519 484 aaKnown RBP11.61□□□□□ -0.55
HDAC6-230ENST00000488543 CYP4F3Q08477 520 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 DPY19L1Q2PZI1 675 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 HKDC1Q2TB90 917 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 IRAK1BP1Q5VVH5 260 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 ANKRD26P1Q6NSI1 321 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 SLC36A4Q6YBV0 504 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 KCTD8Q6ZWB6 473 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 PARGQ86W56 976 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 FAM20CQ8IXL6 584 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 PHACTR4Q8IZ21 702 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 DTWD1Q8N5C7 304 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 DHRSXQ8N5I4 330 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 OR8J2Q8NGG1 315 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 COG8Q96MW5 612 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 MUS81Q96NY9 551 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 PRAP1Q96NZ9 151 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 AIF1LQ9BQI0 150 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 TIMMDC1Q9NPL8 285 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 SMPD3Q9NY59 655 aaPredicted RBP11.61□□□□□ -0.55
HDAC6-230ENST00000488543 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.61□□□□□ -0.55
HDAC6-230ENST00000488543 ERVK-11Q9UQG0 969 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 PCDHB3Q9Y5E6 796 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 PCDHB14Q9Y5E9 798 aa11.61□□□□□ -0.55
HDAC6-230ENST00000488543 A0A087WXM4 84 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 FEZF1A0PJY2 475 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 TOR1BO14657 336 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 LAMP1P11279 417 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 CTSEP14091 401 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 NUDT1P36639 197 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 CAPGP40121 348 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 ASMTP46597 345 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 PRDX1Q06830 199 aaKnown RBP11.6□□□□□ -0.55
HDAC6-230ENST00000488543 ILF3Q12906 894 aaKnown RBP eCLIP11.6□□□□□ -0.55
HDAC6-230ENST00000488543 NKG7Q16617 165 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 ENPP6Q6UWR7 440 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 CAMKMTQ7Z624 323 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 TAF8Q7Z7C8 310 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 DNAJB8Q8NHS0 232 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 CDC26Q8NHZ8 85 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 FBXO30Q8TB52 745 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 GPBAR1Q8TDU6 330 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 NELL1Q92832 810 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 MS4A8Q9BY19 250 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 DUSP15Q9H1R2 295 aaPredicted RBP11.6□□□□□ -0.55
HDAC6-230ENST00000488543 RMND5AQ9H871 391 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 NTN4Q9HB63 628 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 PRMT8Q9NR22 394 aaPredicted RBP11.6□□□□□ -0.55
HDAC6-230ENST00000488543 TAAR2Q9P1P5 351 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 FAF1Q9UNN5 650 aaPredicted RBP11.6□□□□□ -0.55
HDAC6-230ENST00000488543 HEBP2Q9Y5Z4 205 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 GABRR3A8MPY1 467 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 HRO43593 1189 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 NOBOXO60393 691 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 LDLRP01130 860 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 GSNP06396 782 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 COX7A2P14406 83 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 EEF1B2P24534 225 aaKnown RBP11.6□□□□□ -0.55
HDAC6-230ENST00000488543 PTX3P26022 381 aaPredicted RBP11.6□□□□□ -0.55
HDAC6-230ENST00000488543 GZMMP51124 257 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 SH3BGRP55822 239 aaPredicted RBP11.6□□□□□ -0.55
HDAC6-230ENST00000488543 TUBA4AP68366 448 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 PHEXP78562 749 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 ZBED5Q49AG3 693 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 KCTD21Q4G0X4 260 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 GLYATQ6IB77 296 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 SLC9B2Q86UD5 537 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 C10orf111Q8N326 155 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 DNASE2BQ8WZ79 361 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 TBCDQ9BTW9 1192 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 LRRC61Q9BV99 259 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 SORBS1Q9BX66 1292 aaKnown RBP11.6□□□□□ -0.55
HDAC6-230ENST00000488543 ZNF717Q9BY31 904 aaPredicted RBP11.6□□□□□ -0.55
HDAC6-230ENST00000488543 PCED1AQ9H1Q7 454 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 SMURF2Q9HAU4 748 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 SLC6A20Q9NP91 592 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 SPHK1Q9NYA1 384 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 APOBEC3BQ9UH17 382 aaKnown RBP11.6□□□□□ -0.55
HDAC6-230ENST00000488543 PCDHB11Q9Y5F2 797 aa11.6□□□□□ -0.55
HDAC6-230ENST00000488543 LCMT2O60294 686 aaKnown RBP11.59□□□□□ -0.55
HDAC6-230ENST00000488543 SDC3O75056 442 aa11.59□□□□□ -0.55
HDAC6-230ENST00000488543 C1QCP02747 245 aa11.59□□□□□ -0.55
HDAC6-230ENST00000488543 GBAP04062 536 aa11.59□□□□□ -0.55
HDAC6-230ENST00000488543 F3P13726 295 aa11.59□□□□□ -0.55
HDAC6-230ENST00000488543 CXCR2P25025 360 aa11.59□□□□□ -0.55
HDAC6-230ENST00000488543 HOXA6P31267 233 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms