RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 FCHO2Q0JRZ9 810 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 TBCEQ15813 527 aaPredicted RBP17.17■□□□□ 0.34
VIM-206ENST00000487938 COLEC12Q5KU26 742 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 NXPE4Q6UWF7 544 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 PLEKHG7Q6ZR37 379 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 SLC5A11Q8WWX8 675 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 FAM129BQ96TA1 746 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 EFCAB11Q9BUY7 163 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 ACAT2Q9BWD1 397 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 SGPP1Q9BX95 441 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 SLC6A16Q9GZN6 736 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 TMEM38AQ9H6F2 299 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 ZNF556Q9HAH1 456 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 FKBP14Q9NWM8 211 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 IMPAD1Q9NX62 359 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 TAS2R16Q9NYV7 291 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 PRKAB1Q9Y478 270 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 AP1M2Q9Y6Q5 423 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 LILRB5O75023 590 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 RHOP08100 348 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 GABRB1P18505 474 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 CD40LGP29965 261 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 EIF2B2P49770 351 aaKnown RBP17.16■□□□□ 0.34
VIM-206ENST00000487938 RBBP4Q09028 425 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 PDE7AQ13946 482 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 ZNF404Q494X3 552 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 C1orf53Q5VUE5 145 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 MLIPQ5VWP3 458 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 OXR1Q8N573 874 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 SACM1LQ9NTJ5 587 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 TRBC2A0A5B9 178 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 GADD45GO95257 159 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 ADORA3P0DMS8 318 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 ITGA2P17301 1181 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 PXNP49023 591 aaPredicted RBP17.16■□□□□ 0.34
VIM-206ENST00000487938 HTRA3P83110 453 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 NFE2L1Q14494 772 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 PTGES3Q15185 160 aaKnown RBP17.16■□□□□ 0.34
VIM-206ENST00000487938 ZNF77Q15935 545 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 DUSP7Q16829 419 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 PLPP4Q5VZY2 271 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 CCDC80Q76M96 950 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 SLC46A3Q7Z3Q1 461 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 LRRC56Q8IYG6 542 aaPredicted RBP17.16■□□□□ 0.34
VIM-206ENST00000487938 ING5Q8WYH8 240 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 DTD2Q96FN9 168 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 THSD1Q9NS62 852 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 DKK3Q9UBP4 350 aa17.16■□□□□ 0.34
VIM-206ENST00000487938 PAIP2BQ9ULR5 123 aaKnown RBP17.16■□□□□ 0.34
VIM-206ENST00000487938 FAM32AQ9Y421 112 aaKnown RBP17.16■□□□□ 0.34
VIM-206ENST00000487938 CARNS1A5YM72 827 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 FAM227AF5H4B4 570 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 GASTP01350 101 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 CLTBP09497 229 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 PTPN2P17706 415 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 POU1F1P28069 291 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 MAPK9P45984 424 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 XCR1P46094 333 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 PNLIPRP1P54315 467 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 RPS3AP61247 264 aaKnown RBP17.15■□□□□ 0.34
VIM-206ENST00000487938 RPS26P62854 115 aaKnown RBP17.15■□□□□ 0.34
VIM-206ENST00000487938 ARHGAP15Q53QZ3 475 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 ARMCX4Q5H9R4 360 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 CRB2Q5IJ48 1285 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 RAET1GQ6H3X3 334 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 SLC44A2Q8IWA5 706 aaPredicted RBP17.15■□□□□ 0.34
VIM-206ENST00000487938 METTL4Q8N3J2 472 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 B3GNT7Q8NFL0 401 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 GEMIN6Q8WXD5 167 aaKnown RBP17.15■□□□□ 0.34
VIM-206ENST00000487938 WDR34Q96EX3 536 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 COQ10AQ96MF6 247 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 PIP5K1AQ99755 562 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 ROGDIQ9GZN7 287 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 MYNNQ9NPC7 610 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 TAAR2Q9P1P5 351 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 TBC1D14Q9P2M4 693 aa17.15■□□□□ 0.34
VIM-206ENST00000487938 METTL15A6NJ78 407 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 DSCR3O14972 297 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 SPINT1O43278 529 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 POP7O75817 140 aaKnown RBP17.14■□□□□ 0.33
VIM-206ENST00000487938 ADRA2AP08913 450 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 UGT2B10P36537 528 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 GPR1P46091 355 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 TUBA1BP68363 451 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 MESP2Q0VG99 397 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 SFSWAPQ12872 951 aaKnown RBP17.14■□□□□ 0.33
VIM-206ENST00000487938 SLC13A2Q13183 592 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 RPS26P11Q5JNZ5 115 aaPredicted RBP17.14■□□□□ 0.33
VIM-206ENST00000487938 TUBA1AQ71U36 451 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 VN1R5Q7Z5H4 357 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 NRSN1Q8IZ57 195 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 DEPDC4Q8N2C3 294 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 AQP11Q8NBQ7 271 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 CHCHD6Q9BRQ6 235 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 MMP27Q9H306 513 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 MIEF1Q9NQG6 463 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 HCN4Q9Y3Q4 1203 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 RTCAO00442 366 aaKnown RBP17.14■□□□□ 0.33
VIM-206ENST00000487938 MMP20O60882 483 aa17.14■□□□□ 0.33
VIM-206ENST00000487938 CCNB2O95067 398 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms