RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ANXA8L1Q5VT79 327 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 IRAK1BP1Q5VVH5 260 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 ANKRD26P1Q6NSI1 321 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 GUSBP11Q6P575 273 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 CYP2R1Q6VVX0 501 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 PRR23CQ6ZRP0 262 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 IFNEQ86WN2 208 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 OOSP2Q86WS3 158 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 NUDT13Q86X67 352 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 PQLC1Q8N2U9 271 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 MFSD9Q8NBP5 474 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 CCDC74AQ96AQ1 378 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 RGMAQ96B86 450 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 MIEF2Q96C03 454 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 LRGUKQ96M69 825 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 ZNF583Q96ND8 569 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 QRFPRQ96P65 431 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 OR2A14Q96R47 310 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 PHOX2BQ99453 314 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 BHLHE41Q9C0J9 482 aaPredicted RBP13.51□□□□□ -0.25
CUX1-209ENST00000487284 AICDAQ9GZX7 198 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 HRASLS2Q9NWW9 162 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 EGFL7Q9UHF1 273 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 BTNL2Q9UIR0 455 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 HCN4Q9Y3Q4 1203 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 PCDHGA4Q9Y5G9 962 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 ENTPD2Q9Y5L3 495 aa13.51□□□□□ -0.25
CUX1-209ENST00000487284 CPED1A4D0V7 1026 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 OR2A25A4D2G3 310 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 LRIT2A6NDA9 550 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 CASC3O15234 703 aaKnown RBP13.5□□□□□ -0.25
CUX1-209ENST00000487284 FLRT2O43155 660 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 TNFSF14O43557 240 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 PROS1P07225 676 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 ALDH4A1P30038 563 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 CAPZBP47756 277 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 ARFIP1P53367 373 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 OR1D5P58170 312 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 TAS2R50P59544 299 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 PPP1CAP62136 330 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 C2orf80Q0P641 193 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 HYAL2Q12891 473 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 PROX2Q3B8N5 592 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 AASDHQ4L235 1098 aaPredicted RBP13.5□□□□□ -0.25
CUX1-209ENST00000487284 ZNF385BQ569K4 471 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 CCNYL2Q5T2Q4 361 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 UBE3DQ7Z6J8 389 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 TRPV3Q8NET8 790 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 PHF12Q96QT6 1004 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 PANX1Q96RD7 426 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 ECSITQ9BQ95 431 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 TACO1Q9BSH4 297 aaKnown RBP13.5□□□□□ -0.25
CUX1-209ENST00000487284 KAT8Q9H7Z6 458 aaKnown RBP13.5□□□□□ -0.25
CUX1-209ENST00000487284 DDX31Q9H8H2 851 aaKnown RBP13.5□□□□□ -0.25
CUX1-209ENST00000487284 ATAD3AQ9NVI7 634 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 ACTR10Q9NZ32 417 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 C6orf203Q9P0P8 240 aaPredicted RBP13.5□□□□□ -0.25
CUX1-209ENST00000487284 ANKMY1Q9P2S6 941 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 MAGEL2Q9UJ55 1249 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 USP22Q9UPT9 525 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 C15orf41Q9Y2V0 281 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 KLK4Q9Y5K2 254 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 SPEGQ15772 3267 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 COL5A1P20908 1838 aaPredicted RBP13.5□□□□□ -0.25
CUX1-209ENST00000487284 UNC13CQ8NB66 2214 aa13.5□□□□□ -0.25
CUX1-209ENST00000487284 IGHV1OR21-1A0A087WYE8 117 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 EME2A4GXA9 379 aaPredicted RBP13.49□□□□□ -0.25
CUX1-209ENST00000487284 PROB1E7EW31 1015 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 RTCAO00442 366 aaKnown RBP13.49□□□□□ -0.25
CUX1-209ENST00000487284 RNASET2O00584 256 aaKnown RBP13.49□□□□□ -0.25
CUX1-209ENST00000487284 CASQ2O14958 399 aaPredicted RBP13.49□□□□□ -0.25
CUX1-209ENST00000487284 B4GAT1O43505 415 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 TBX19O60806 448 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 GSNP06396 782 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 IL3P08700 152 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 ZCCHC18P0CG32 403 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 CD59P13987 128 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 HOXB3P14651 431 aaPredicted RBP13.49□□□□□ -0.25
CUX1-209ENST00000487284 SLC7A1P30825 629 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 PPM1FP49593 454 aaPredicted RBP13.49□□□□□ -0.25
CUX1-209ENST00000487284 MAPK12P53778 367 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 EPHA4P54764 986 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 RPS15AP62244 130 aaKnown RBP13.49□□□□□ -0.25
CUX1-209ENST00000487284 DAB2P98082 770 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 MC1RQ01726 317 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 KLC1Q07866 573 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 NR1D2Q14995 579 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 SLC5A12Q1EHB4 618 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 INAVAQ3KP66 663 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 PERM1Q5SV97 790 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 GPR155Q7Z3F1 870 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 TRIM73Q86UV7 250 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 CALHM3Q86XJ0 350 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 PROSER1Q86XN7 944 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 CLECL1Q8IZS7 167 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 Q8N9G6 341 aaPredicted RBP13.49□□□□□ -0.25
CUX1-209ENST00000487284 VPS37AQ8NEZ2 397 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 OR6C4Q8NGE1 309 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 RHBDD1Q8TEB9 315 aa13.49□□□□□ -0.25
CUX1-209ENST00000487284 PPCDCQ96CD2 204 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms