RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 WISP1O95388 367 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 HPP00738 406 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 IMPDH1P20839 514 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 IL10P22301 178 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 PIK3CBP42338 1070 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 SSR2P43308 183 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 PRKAA2P54646 552 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 RHAGQ02094 409 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 CLCQ05315 142 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 ABRAXAS2Q15018 415 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 TMEM35AQ53FP2 167 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 SGO1Q5FBB7 561 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 COLEC12Q5KU26 742 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 IRAK1BP1Q5VVH5 260 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 KHDRBS2Q5VWX1 349 aaKnown RBP13.9□□□□□ -0.18
USP4-212ENST00000486549 TCTN3Q6NUS6 607 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 LETMD1Q6P1Q0 360 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 TMEM205Q6UW68 189 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 ZYG11AQ6WRX3 759 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 ASB18Q6ZVZ8 466 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 NDUFAF7Q7L592 441 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 UBE3DQ7Z6J8 389 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 CCNYL1Q8N7R7 359 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 FAM47BQ8NA70 645 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 SRFBP1Q8NEF9 429 aaKnown RBP13.9□□□□□ -0.18
USP4-212ENST00000486549 WDR20Q8TBZ3 569 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 APOPT1Q96IL0 206 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 SERINC2Q96SA4 455 aa13.9□□□□□ -0.18
USP4-212ENST00000486549 SORBS1Q9BX66 1292 aaKnown RBP13.9□□□□□ -0.18
USP4-212ENST00000486549 CLK4Q9HAZ1 481 aaKnown RBP13.9□□□□□ -0.18
USP4-212ENST00000486549 C19orf25Q9UFG5 118 aaPredicted RBP13.9□□□□□ -0.18
USP4-212ENST00000486549 PCDHGA9Q9Y5G4 932 aaKnown RBP13.9□□□□□ -0.18
USP4-212ENST00000486549 PCDH17O14917 1159 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 SPAG7O75391 227 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 SEC24DO94855 1032 aaPredicted RBP13.89□□□□□ -0.19
USP4-212ENST00000486549 OR4F21O95013 312 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 CELA2AP08217 269 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 MAOAP21397 527 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 RAB38P57729 211 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 BTG2P78543 158 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 ZNF844Q08AG5 666 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 Q0VFX4 171 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 IFT88Q13099 833 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 MYBPC3Q14896 1274 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 PCOLCEQ15113 449 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 NSDHLQ15738 373 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 AP5B1Q2VPB7 878 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 GGTA1PQ4G0N0 100 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 DEPDC1Q5TB30 811 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 FRG2Q64ET8 278 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 ZNF793Q6ZN11 406 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 CPEB2Q7Z5Q1 589 aaKnown RBP13.89□□□□□ -0.19
USP4-212ENST00000486549 ANKRD37Q7Z713 158 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 AMER2Q8N7J2 671 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 CCDC126Q96EE4 140 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 L3HYPDHQ96EM0 354 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 THOC3Q96J01 351 aaKnown RBP13.89□□□□□ -0.19
USP4-212ENST00000486549 PTCHD1Q96NR3 888 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 FRG2BQ96QU4 278 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 CENPKQ9BS16 269 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 TBCDQ9BTW9 1192 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 NPLQ9BXD5 320 aaPredicted RBP13.89□□□□□ -0.19
USP4-212ENST00000486549 ROGDIQ9GZN7 287 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 ZNF700Q9H0M5 742 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 ELOVL6Q9H5J4 265 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 PRDM7Q9NQW5 492 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 RIC8BQ9NVN3 520 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 TSC22D4Q9Y3Q8 395 aa13.89□□□□□ -0.19
USP4-212ENST00000486549 LOC102723996A0A087X1L8 192 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 PLPP1O14494 284 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 PRMT3O60678 531 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 ERLIN1O75477 346 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 ETHE1O95571 254 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 UQCRHP07919 91 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 CYC1P08574 325 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 CPA3P15088 417 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 ATP5A1P25705 553 aaKnown RBP13.88□□□□□ -0.19
USP4-212ENST00000486549 PTX3P26022 381 aaPredicted RBP13.88□□□□□ -0.19
USP4-212ENST00000486549 CASRP41180 1078 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 LIM2P55344 173 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 SFT2D3Q587I9 215 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 CEP85LQ5SZL2 805 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 QSOX2Q6ZRP7 698 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 GPRIN3Q6ZVF9 776 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 CDYL2Q8N8U2 506 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 ACOT4Q8N9L9 421 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 BANPQ8N9N5 519 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 PLPP5Q8NEB5 264 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 ARMC2Q8NEN0 867 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 RDH11Q8TC12 318 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 RGMAQ96B86 450 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 MAGEB10Q96LZ2 347 aaPredicted RBP13.88□□□□□ -0.19
USP4-212ENST00000486549 ZIM3Q96PE6 472 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 SMC6Q96SB8 1091 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 ZNF382Q96SR6 550 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 CSF3RQ99062 836 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 MAPKAP1Q9BPZ7 522 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 TMEM109Q9BVC6 243 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 CENPHQ9H3R5 247 aa13.88□□□□□ -0.19
USP4-212ENST00000486549 FARSBQ9NSD9 589 aaKnown RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms