RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 TDHQ8IZJ6 230 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 BANPQ8N9N5 519 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 Q8NFD4 153 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 OR1B1Q8NGR6 318 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 SLC26A7Q8TE54 656 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 SAP25Q8TEE9 199 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 HEXDCQ8WVB3 486 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 LIPHQ8WWY8 451 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 BADQ92934 168 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 CYYR1Q96J86 154 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 RADILQ96JH8 1075 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 FER1L6-AS2Q96M78 137 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 RCHY1Q96PM5 261 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 TEX13BQ9BXU2 312 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 TMOD3Q9NYL9 352 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 THYN1Q9P016 225 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 Q9UF83 564 aa2.32□□□□□ -2.04
VPS50-216ENST00000484954 SRRM4A7MD48 611 aaKnown RBP2.31□□□□□ -2.04
VPS50-216ENST00000484954 NPIPA3F8WFD2 350 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 FBP2O00757 339 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 ACSL4O60488 711 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 LY6G6DO95868 133 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 DNTTP04053 509 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 SP9P0CG40 484 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 PSMA3P25788 255 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 SRD5A2P31213 254 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 IST1P53990 364 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 CALD1Q05682 793 aaKnown RBP2.31□□□□□ -2.04
VPS50-216ENST00000484954 LTB4RQ15722 352 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 UGCGQ16739 394 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 TIMM50Q3ZCQ8 353 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 UTF1Q5T230 341 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 TCEAL6Q6IPX3 200 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 SLC30A6Q6NXT4 461 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 RFWD3Q6PCD5 774 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 TMEM182Q6ZP80 229 aaPredicted RBP2.31□□□□□ -2.04
VPS50-216ENST00000484954 LRRC49Q8IUZ0 686 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 NCOA7Q8NI08 942 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 LINC00167Q96N53 147 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 PINK1Q9BXM7 581 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 UBA5Q9GZZ9 404 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 LMAN1LQ9HAT1 526 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 UBQLN2Q9UHD9 624 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 NOCTQ9UK39 431 aaKnown RBP2.31□□□□□ -2.04
VPS50-216ENST00000484954 SH3GLB1Q9Y371 365 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 CCL27Q9Y4X3 112 aa2.31□□□□□ -2.04
VPS50-216ENST00000484954 TRAV9-2A0A087WT02 112 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 TCP10L2B9ZVM9 353 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 CCDC188H7C350 402 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 HAT1O14929 419 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 B4GAT1O43505 415 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 UMPSP11172 480 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 ANPEPP15144 967 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 OR3A1P47881 315 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 ADARP55265 1226 aaKnown RBP2.3□□□□□ -2.04
VPS50-216ENST00000484954 IGLV3-21P80748 117 aaPredicted RBP2.3□□□□□ -2.04
VPS50-216ENST00000484954 ZNF79Q15937 498 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 PCK2Q16822 640 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 SLC27A4Q6P1M0 643 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 C11orf57Q6ZUT1 292 aaPredicted RBP2.3□□□□□ -2.04
VPS50-216ENST00000484954 DNAJB7Q7Z6W7 309 aaPredicted RBP2.3□□□□□ -2.04
VPS50-216ENST00000484954 SLC43A2Q8N370 569 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 PARP8Q8N3A8 854 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 GRK7Q8WTQ7 553 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 GTSF1Q8WW33 167 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 SLC35C1Q96A29 364 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 NUS1Q96E22 293 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 AK8Q96MA6 479 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 TSSK2Q96PF2 358 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 UBQLN3Q9H347 655 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 IKZF3Q9UKT9 509 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 SNX7Q9UNH6 387 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 PCDHGA1Q9Y5H4 931 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 CPQQ9Y646 472 aa2.3□□□□□ -2.04
VPS50-216ENST00000484954 ZNF724A8MTY0 619 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 P2RX6O15547 441 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 SRPX2O60687 465 aaPredicted RBP2.29□□□□□ -2.04
VPS50-216ENST00000484954 FRAT2O75474 233 aaPredicted RBP2.29□□□□□ -2.04
VPS50-216ENST00000484954 KBTBD11O94819 623 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 PGLSO95336 258 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 MOCS2O96007 188 aaPredicted RBP2.29□□□□□ -2.04
VPS50-216ENST00000484954 PDGFRAP16234 1089 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 DRD3P35462 400 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 OR3A3P47888 321 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 NPY4RP50391 375 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 RBBP4Q09028 425 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 RFTN1Q14699 578 aaPredicted RBP2.29□□□□□ -2.04
VPS50-216ENST00000484954 ZRANB3Q5FWF4 1079 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 TXNRD3NBQ6F5E7 133 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 PAMR1Q6UXH9 720 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 CHST3Q7LGC8 479 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 NUFIP2Q7Z417 695 aaKnown RBP2.29□□□□□ -2.04
VPS50-216ENST00000484954 LSMEM1Q8N8F7 131 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 IQUBQ8NA54 791 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 RIT1Q92963 219 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 HSD17B14Q9BPX1 270 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 SLC39A8Q9C0K1 460 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 CUTCQ9NTM9 273 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 ZNF446Q9NWS9 450 aa2.29□□□□□ -2.04
VPS50-216ENST00000484954 MGAT4AQ9UM21 535 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms