RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SNRNP48Q6IEG0 339 aaKnown RBP4.55□□□□□ -1.68
UPF3B-203ENST00000478840 IRGCQ6NXR0 463 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 ZNF790Q6PG37 636 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 C17orf107Q6ZR85 190 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 CDHR3Q6ZTQ4 885 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 SLC43A2Q8N370 569 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 MINDY2Q8NBR6 621 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 KBTBD8Q8NFY9 601 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 OR2T11Q8NH01 316 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 ZNRF4Q8WWF5 429 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 SLC35C1Q96A29 364 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 RAB39BQ96DA2 213 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 GIMAP5Q96F15 307 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 THOC3Q96J01 351 aaKnown RBP4.55□□□□□ -1.68
UPF3B-203ENST00000478840 UBAC1Q9BSL1 405 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 NMNAT2Q9BZQ4 307 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 HIPK2Q9H2X6 1198 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 ATP13A3Q9H7F0 1226 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 DDX28Q9NUL7 540 aaKnown RBP4.55□□□□□ -1.68
UPF3B-203ENST00000478840 RNF186Q9NXI6 227 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 HACD3Q9P035 362 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 U3KQV3 271 aa4.55□□□□□ -1.68
UPF3B-203ENST00000478840 GREB1LQ9C091 1923 aaPredicted RBP4.54□□□□□ -1.68
UPF3B-203ENST00000478840 DISP3Q9P2K9 1392 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 TRBV4-1A0A0J9YWV2 114 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 CCSO14618 274 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 OGTO15294 1046 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 KHDRBS3O75525 346 aaKnown RBP4.54□□□□□ -1.68
UPF3B-203ENST00000478840 SEC24AO95486 1093 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 IFNB1P01574 187 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 APRTP07741 180 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 F7P08709 466 aaPredicted RBP4.54□□□□□ -1.68
UPF3B-203ENST00000478840 FAM157CP0CG43 387 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 SLC2A2P11168 524 aaPredicted RBP4.54□□□□□ -1.68
UPF3B-203ENST00000478840 CEACAM1P13688 526 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 MARCKSP29966 332 aaPredicted RBP4.54□□□□□ -1.68
UPF3B-203ENST00000478840 MDH1P40925 334 aaKnown RBP4.54□□□□□ -1.68
UPF3B-203ENST00000478840 ALDH3B1P43353 468 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 NUMBP49757 651 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 CCL11P51671 97 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 HERV-K104P63124 156 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 HSPA14Q0VDF9 509 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 CNTN1Q12860 1018 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 PDZK1IP1Q13113 114 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 PDIA5Q14554 519 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 WSCD2Q2TBF2 565 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 C19orf48Q6RUI8 117 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 FAM159AQ6UWV7 190 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 STPG4Q8N801 248 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 ZNF540Q8NDQ6 660 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 OR13C5Q8NGS8 318 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 GATAD1Q8WUU5 269 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 NEDD4LQ96PU5 975 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 PCDHB18PQ96TA0 734 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 IL12RB2Q99665 862 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 TDRD1Q9BXT4 1180 aaKnown RBP4.54□□□□□ -1.68
UPF3B-203ENST00000478840 FNDC4Q9H6D8 234 aaPredicted RBP4.54□□□□□ -1.68
UPF3B-203ENST00000478840 ZNF556Q9HAH1 456 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 SLC35D1Q9NTN3 355 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 NDUFA13Q9P0J0 144 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 ANKMY1Q9P2S6 941 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 POLKQ9UBT6 870 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 PPP2R2CQ9Y2T4 447 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 SMCHD1A6NHR9 2005 aa4.54□□□□□ -1.68
UPF3B-203ENST00000478840 NPC1L1Q9UHC9 1359 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 A0A087WZ39 114 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 FAM172BPA6NC97 362 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 EEF2KO00418 725 aaKnown RBP4.53□□□□□ -1.68
UPF3B-203ENST00000478840 ARPC1BO15143 372 aaKnown RBP4.53□□□□□ -1.68
UPF3B-203ENST00000478840 CIDEAO60543 219 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 PEX11AO75192 247 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 GMNNO75496 209 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 KRT36O76013 467 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 AKR7A3O95154 331 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 TXNDC12O95881 172 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 CRYAAP02489 173 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 FAM200BP0CF97 657 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 ERVK-10P10266 1014 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 AADACP22760 399 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 CTNNA2P26232 953 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 ARL16Q0P5N6 197 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 TEAD2Q15562 447 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 ZRSR1Q15695 479 aaKnown RBP4.53□□□□□ -1.68
UPF3B-203ENST00000478840 LRRC37A5PQ49AS3 106 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 TEX35Q5T0J7 233 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 GDPD4Q6W3E5 623 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 ADGRD2Q7Z7M1 963 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 SMIM29Q86T20 159 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 C17orf64Q86WR6 236 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 ZDHHC17Q8IUH5 632 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 SAMD14Q8IZD0 417 aaPredicted RBP4.53□□□□□ -1.68
UPF3B-203ENST00000478840 NIPA2Q8N8Q9 360 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 Q8N9P0 234 aaPredicted RBP4.53□□□□□ -1.68
UPF3B-203ENST00000478840 OR6M1Q8NGM8 313 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 OR10G8Q8NGN5 311 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 MRPL53Q96EL3 112 aaKnown RBP4.53□□□□□ -1.68
UPF3B-203ENST00000478840 C16orf58Q96GQ5 468 aa4.53□□□□□ -1.68
UPF3B-203ENST00000478840 NKX3-1Q99801 234 aaPredicted RBP4.53□□□□□ -1.68
UPF3B-203ENST00000478840 MTIF3Q9H2K0 278 aaKnown RBP4.53□□□□□ -1.68
UPF3B-203ENST00000478840 DPH5Q9H2P9 285 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms