RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 EBF3Q9H4W6 596 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 ZDHHC6Q9H6R6 413 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 UPF2Q9HAU5 1272 aaKnown RBP3.86□□□□□ -1.79
VPS13D-207ENST00000476169 CRLF2Q9HC73 371 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 DDX28Q9NUL7 540 aaKnown RBP3.86□□□□□ -1.79
VPS13D-207ENST00000476169 RAB20Q9NX57 234 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 SPHK1Q9NYA1 384 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 C1RLQ9NZP8 487 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 PCSK1NQ9UHG2 260 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 MRPS33Q9Y291 106 aaKnown RBP3.86□□□□□ -1.79
VPS13D-207ENST00000476169 MRPS2Q9Y399 296 aaKnown RBP3.86□□□□□ -1.79
VPS13D-207ENST00000476169 MAB21L2Q9Y586 359 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 TTC41PQ6P2S7 1318 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 WDR19Q8NEZ3 1342 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 WDR91A4D1P6 747 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 GOLGA8OA6NCC3 632 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 ANTXRLA6NF34 631 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 PRR32B1ATL7 298 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 GOLGA8NF8WBI6 632 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 PDXKO00764 312 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 CHEK1O14757 476 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 SYT7O43581 403 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 BUB1O43683 1085 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 RNASEH1O60930 286 aaKnown RBP3.85□□□□□ -1.79
VPS13D-207ENST00000476169 CLN5O75503 358 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 WISP2O76076 250 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 PDE9AO76083 593 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 OR4F21O95013 312 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 RAF1P04049 648 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 CSF2P04141 144 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 YES1P07947 543 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 UQCRFS1P1P0C7P4 283 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 CEACAM1P13688 526 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 F3P13726 295 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 MYOD1P15172 320 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 CDH3P22223 829 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 SSTR2P30874 369 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 MAGEA11P43364 429 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 OR3A3P47888 321 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 KCNJ4P48050 445 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 GLIPR1P48060 266 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 CLDN17P56750 224 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 ABATP80404 500 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 HEPACAMQ14CZ8 416 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 DUOXA1Q1HG43 343 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 TDRD12Q587J7 1177 aaKnown RBP3.85□□□□□ -1.79
VPS13D-207ENST00000476169 EFHC1Q5JVL4 640 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 SPDYCQ5MJ68 293 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 HIST2H2AA3Q6FI13 130 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 CORO6Q6QEF8 472 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 CDHR3Q6ZTQ4 885 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 EFL1Q7Z2Z2 1120 aaKnown RBP3.85□□□□□ -1.79
VPS13D-207ENST00000476169 PRUNE1Q86TP1 453 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 YRDCQ86U90 279 aaKnown RBP3.85□□□□□ -1.79
VPS13D-207ENST00000476169 GLCCI1Q86VQ1 547 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 FAM131BQ86XD5 332 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 TTC5Q8N0Z6 440 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 PRSS35Q8N3Z0 413 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 ZNF397Q8NF99 534 aaPredicted RBP3.85□□□□□ -1.79
VPS13D-207ENST00000476169 OR4C15Q8NGM1 316 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 OR8J1Q8NGP2 316 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 ZNF671Q8TAW3 534 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 CHPT1Q8WUD6 406 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 MCHR2Q969V1 340 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 NCLNQ969V3 563 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 PINX1Q96BK5 328 aaKnown RBP3.85□□□□□ -1.79
VPS13D-207ENST00000476169 PHF21BQ96EK2 531 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 SENP8Q96LD8 212 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 FCRL4Q96PJ5 515 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 VPS35Q96QK1 796 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 OR1F2PQ96R84 312 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 CBWD1Q9BRT8 395 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 KRTAP9-4Q9BYQ2 154 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 GANQ9H2C0 597 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 ARRDC1-AS1Q9H2J1 176 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 TLE6Q9H808 572 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 COG4Q9H9E3 785 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 FAM114A2Q9NRY5 505 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 GLRX2Q9NS18 164 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 HIF1ANQ9NWT6 349 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 HYPKQ9NX55 129 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 ELOVL5Q9NYP7 299 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 ERVK-18Q9QC07 812 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 MRTO4Q9UKD2 239 aaKnown RBP3.85□□□□□ -1.79
VPS13D-207ENST00000476169 FOXJ3Q9UPW0 622 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 WRNQ14191 1432 aaPredicted RBP eCLIP3.85□□□□□ -1.79
VPS13D-207ENST00000476169 CKAP5Q14008 2032 aa3.85□□□□□ -1.79
VPS13D-207ENST00000476169 TEX13DA0A0J9YY54 714 aaPredicted RBP3.84□□□□□ -1.79
VPS13D-207ENST00000476169 LINC01553A4QN01 128 aa3.84□□□□□ -1.79
VPS13D-207ENST00000476169 NCF1BA6NI72 391 aaPredicted RBP3.84□□□□□ -1.79
VPS13D-207ENST00000476169 NCF1CA8MVU1 366 aaPredicted RBP3.84□□□□□ -1.79
VPS13D-207ENST00000476169 H3BNX3 289 aa3.84□□□□□ -1.79
VPS13D-207ENST00000476169 ZNHIT1O43257 154 aa3.84□□□□□ -1.79
VPS13D-207ENST00000476169 SLC28A2O43868 658 aa3.84□□□□□ -1.79
VPS13D-207ENST00000476169 RFPL2O75678 378 aa3.84□□□□□ -1.79
VPS13D-207ENST00000476169 GAGE7O76087 117 aa3.84□□□□□ -1.79
VPS13D-207ENST00000476169 TFAP2AP05549 437 aa3.84□□□□□ -1.79
VPS13D-207ENST00000476169 SERPINF2P08697 491 aa3.84□□□□□ -1.79
VPS13D-207ENST00000476169 FAM106CPP0CH98 169 aa3.84□□□□□ -1.79
VPS13D-207ENST00000476169 GAGE12FP0CL80 117 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms