RNA–Protein interactions for RNA: ENST00000474825.1

ATG4A-207, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-207ENST00000474825 KCNC2Q96PR1 638 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 TEFMQ96QE5 360 aaKnown RBP6.29□□□□□ -1.4
ATG4A-207ENST00000474825 CDRT15Q96T59 188 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 SLC38A3Q99624 504 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 PRPF18Q99633 342 aaKnown RBP6.29□□□□□ -1.4
ATG4A-207ENST00000474825 CENPKQ9BS16 269 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 ROGDIQ9GZN7 287 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 PAIP1Q9H074 479 aaKnown RBP6.29□□□□□ -1.4
ATG4A-207ENST00000474825 RASSF4Q9H2L5 321 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 KLHL31Q9H511 634 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 DENND2DQ9H6A0 471 aaPredicted RBP6.29□□□□□ -1.4
ATG4A-207ENST00000474825 NANOGQ9H9S0 305 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 CLK4Q9HAZ1 481 aaKnown RBP6.29□□□□□ -1.4
ATG4A-207ENST00000474825 FAM60AQ9NP50 221 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 DNAAF2Q9NVR5 837 aaKnown RBP6.29□□□□□ -1.4
ATG4A-207ENST00000474825 EHD3Q9NZN3 535 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 SLAMF8Q9P0V8 285 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 LRIT1Q9P2V4 623 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 PADI4Q9UM07 663 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 POMPQ9Y244 141 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 KLHL20Q9Y2M5 609 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 AP3M1Q9Y2T2 418 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 ASB4Q9Y574 426 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 PCDHGB2Q9Y5G2 931 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 SLC22A7Q9Y694 548 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 R4GN57 208 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 THADAQ6YHU6 1953 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 PCDH15Q96QU1 1955 aa6.29□□□□□ -1.4
ATG4A-207ENST00000474825 MYO15AQ9UKN7 3530 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 FITM1A5D6W6 292 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 PRORSD1PA6NEY8 169 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 URADA6NGE7 173 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 RHPN2P1A8MT19 583 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 H0YGG7 62 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 SAP18O00422 153 aaKnown RBP6.28□□□□□ -1.4
ATG4A-207ENST00000474825 RTCAO00442 366 aaKnown RBP6.28□□□□□ -1.4
ATG4A-207ENST00000474825 NME4O00746 187 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 TXNDC9O14530 226 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 P2RX6O15547 441 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 DNAJA2O60884 412 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 KCNH1O95259 989 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 CER1O95813 267 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 ABCB1P08183 1280 aaPredicted RBP6.28□□□□□ -1.4
ATG4A-207ENST00000474825 SYPP08247 313 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 SLC35G6P0C7Q6 338 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 ALPPL2P10696 532 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 LAMP1P11279 417 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 PVRP15151 417 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 DDX5P17844 614 aaKnown RBP6.28□□□□□ -1.4
ATG4A-207ENST00000474825 DDCP20711 480 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 ME2P23368 584 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 HPCAL1P37235 193 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 KIR3DL1P43629 444 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 CCT8P50990 548 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 PCBP4P57723 403 aaKnown RBP6.28□□□□□ -1.4
ATG4A-207ENST00000474825 EEFSECP57772 596 aaKnown RBP6.28□□□□□ -1.4
ATG4A-207ENST00000474825 TAS2R50P59544 299 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 ARF3P61204 181 aaPredicted RBP6.28□□□□□ -1.4
ATG4A-207ENST00000474825 PPP1CAP62136 330 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 CYP4F2P78329 520 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 MXRA7P84157 204 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 RGS1Q08116 209 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 TGM3Q08188 693 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 TRAP1Q12931 704 aaKnown RBP6.28□□□□□ -1.4
ATG4A-207ENST00000474825 NFYCQ13952 458 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 HEPACAMQ14CZ8 416 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 PRSS53Q2L4Q9 553 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 ZNF385BQ569K4 471 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 RUNDC3AQ59EK9 446 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 ZC3H12BQ5HYM0 836 aaKnown RBP6.28□□□□□ -1.4
ATG4A-207ENST00000474825 SAMD4BQ5PRF9 694 aaKnown RBP6.28□□□□□ -1.4
ATG4A-207ENST00000474825 CCNYL2Q5T2Q4 361 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 ANXA8L1Q5VT79 327 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 GARNL3Q5VVW2 1013 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 FRMPD2BQ6IN97 320 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 ARMC6Q6NXE6 501 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 RIPOR1Q6ZS17 1223 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 PRSS42Q7Z5A4 293 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 ADCK2Q7Z695 626 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 SPRED1Q7Z699 444 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 DHDDSQ86SQ9 333 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 CALHM3Q86XJ0 350 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 ZNF761Q86XN6 746 aaPredicted RBP6.28□□□□□ -1.4
ATG4A-207ENST00000474825 KMT5CQ86Y97 462 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 HPS6Q86YV9 775 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 AMER3Q8N944 861 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 ACOT4Q8N9L9 421 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 C19orf47Q8N9M1 422 aaKnown RBP6.28□□□□□ -1.4
ATG4A-207ENST00000474825 FAM47BQ8NA70 645 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 ZNF511Q8NB15 262 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 OR7A2PQ8NGA2 310 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 OR52E4Q8NGH9 312 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 OR10G6Q8NH81 332 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 CLHC1Q8NHS4 586 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 PSMA8Q8TAA3 256 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 WDR60Q8WVS4 1066 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 KLHL6Q8WZ60 621 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 ASB9Q96DX5 294 aa6.28□□□□□ -1.4
ATG4A-207ENST00000474825 DUS3LQ96G46 650 aaKnown RBP6.28□□□□□ -1.4
ATG4A-207ENST00000474825 ZDHHC12Q96GR4 267 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms