RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 OR12D3Q9UGF7 316 aa3.34□□□□□ -1.87
UBR3-208ENST00000474426 MRM2Q9UI43 246 aaKnown RBP3.34□□□□□ -1.87
UBR3-208ENST00000474426 CRLS1Q9UJA2 301 aa3.34□□□□□ -1.87
UBR3-208ENST00000474426 CLASP1Q7Z460 1538 aa3.34□□□□□ -1.87
UBR3-208ENST00000474426 AQRO60306 1485 aaKnown RBP eCLIP3.34□□□□□ -1.87
UBR3-208ENST00000474426 HFM1A2PYH4 1435 aa3.34□□□□□ -1.87
UBR3-208ENST00000474426 FAM135BQ49AJ0 1406 aa3.34□□□□□ -1.87
UBR3-208ENST00000474426 SETD5Q9C0A6 1442 aa3.34□□□□□ -1.87
UBR3-208ENST00000474426 PNPLA6Q8IY17 1366 aa3.34□□□□□ -1.87
UBR3-208ENST00000474426 EMSYQ7Z589 1322 aa3.34□□□□□ -1.87
UBR3-208ENST00000474426 MAGEB6P1A0A0J9YX57 407 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 NPHP3-ACAD11A0A0J9YXS1 232 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 PRR33A8MZF0 331 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 POC1B-GALNT4F8VUJ3 575 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 ACOT7O00154 380 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 CFLARO15519 480 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 MATN4O95460 622 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 RARAP10276 462 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 ITGA4P13612 1032 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 GLDCP23378 1020 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 OTX2P32243 289 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 DLSTP36957 453 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 CASRP41180 1078 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 YAP1P46937 504 aaKnown RBP3.34□□□□□ -1.88
UBR3-208ENST00000474426 GCGRP47871 477 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 MMP15P51511 669 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 MMP16P51512 607 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 SNAP25P60880 206 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 LSM11P83369 360 aaKnown RBP eCLIP3.34□□□□□ -1.88
UBR3-208ENST00000474426 SELPLGQ14242 412 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 TMEM249Q2WGJ8 235 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 C3orf36Q3SXR2 165 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 ZNF568Q3ZCX4 644 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 SH3PXD2AQ5TCZ1 1133 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 PSAPL1Q6NUJ1 521 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 KLHL17Q6TDP4 642 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 CHST9Q7L1S5 443 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 C16orf62Q7Z3J2 963 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 LUZP2Q86TE4 346 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 BATF2Q8N1L9 274 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 CCDC185Q8N715 623 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 C1orf127Q8N9H9 656 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 FAM83FQ8NEG4 500 aaPredicted RBP3.34□□□□□ -1.88
UBR3-208ENST00000474426 SUN3Q8TAQ9 357 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 DNAJB3Q8WWF6 145 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 DAZLQ92904 295 aaKnown RBP3.34□□□□□ -1.88
UBR3-208ENST00000474426 ARRDC3Q96B67 414 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 L3HYPDHQ96EM0 354 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 C4orf36Q96KX1 117 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 TMEM56Q96MV1 263 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 NIPSNAP1Q9BPW8 284 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 SLC30A2Q9BRI3 323 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 SRSF8Q9BRL6 282 aaKnown RBP3.34□□□□□ -1.88
UBR3-208ENST00000474426 BOCQ9BWV1 1114 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 TRIM9Q9C026 710 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 CALHM2Q9HA72 323 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 FZD3Q9NPG1 666 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 SIRT7Q9NRC8 400 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 CHRAC1Q9NRG0 131 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 YAE1D1Q9NRH1 226 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 ACOXLQ9NUZ1 547 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 DAPP1Q9UN19 280 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 HEMK1Q9Y5R4 338 aaPredicted RBP3.34□□□□□ -1.88
UBR3-208ENST00000474426 HSPE1-MOB4S4R3N1 261 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 TMEM56-RWDD3S4R434 201 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 DISP1Q96F81 1524 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 AFF2P51816 1311 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 KIF13AQ9H1H9 1805 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 OR2A25A4D2G3 310 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 WIPF3A6NGB9 483 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 TMEM189-UBE2V1I3L0A0 370 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 M0QXV9 152 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 ANKRD28O15084 1053 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 SNAI2O43623 268 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 DNAJA2O60884 412 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 ANGPTL1O95841 491 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 TFAP2AP05549 437 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 CEACAM5P06731 702 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 C8orf89P0DMQ9 161 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 MAPTP10636 758 aaKnown RBP3.34□□□□□ -1.88
UBR3-208ENST00000474426 GM2AP17900 193 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 SPI1P17947 270 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 MSR1P21757 451 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 BGNP21810 368 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 NDUFS1P28331 727 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 SDHAP31040 664 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 UGT1A3P35503 534 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 UGT1A5P35504 534 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 ETV4P43268 484 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 C21orf59P57076 290 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 NHLH2Q02577 135 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 GABPAQ06546 454 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 BTN1A1Q13410 526 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 IKZF1Q13422 519 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 BFSP2Q13515 415 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 MPP2Q14168 576 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 PGM5Q15124 567 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 IMPG1Q17R60 797 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 LPCAT3Q6P1A2 487 aa3.34□□□□□ -1.88
UBR3-208ENST00000474426 RHBDF2Q6PJF5 856 aa3.34□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms