RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 ZNF451Q9Y4E5 1061 aa16.54■□□□□ 0.24
CPSF4-209ENST00000465132 TRAF6Q9Y4K3 522 aa16.54■□□□□ 0.24
CPSF4-209ENST00000465132 PCDHGB7Q9Y5F8 929 aa16.54■□□□□ 0.24
CPSF4-209ENST00000465132 TNRC6AQ8NDV7 1962 aaKnown RBP16.53■□□□□ 0.24
CPSF4-209ENST00000465132 NBPF19A0A087WUL8 3843 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 LOC105369274A0A096LPK9 316 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 LOC102723532A0A0G2JNH3 316 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 SERTM1A2A2V5 107 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 MANBAO00462 879 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 CD22P20273 847 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 RAP1GDS1P52306 607 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 BST1Q10588 318 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 DDX39BQ13838 428 aaKnown RBP16.53■□□□□ 0.24
CPSF4-209ENST00000465132 IMPG1Q17R60 797 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 PRTGQ2VWP7 1150 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 SH2D4BQ5SQS7 431 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 FAM69BQ5VUD6 431 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 RHBDD2Q6NTF9 364 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 RPS27LQ71UM5 84 aaKnown RBP16.53■□□□□ 0.24
CPSF4-209ENST00000465132 PAGE2Q7Z2X7 111 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 OR4N4Q8N0Y3 316 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 ANKRD53Q8N9V6 530 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 HUS1BQ8NHY5 278 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 WDR20Q8TBZ3 569 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 ZNF473Q8WTR7 871 aaKnown RBP16.53■□□□□ 0.24
CPSF4-209ENST00000465132 CKAP2Q8WWK9 683 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 GAL3ST3Q96A11 431 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 RGMAQ96B86 450 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 METTL2AQ96IZ6 378 aaKnown RBP16.53■□□□□ 0.24
CPSF4-209ENST00000465132 KCNC2Q96PR1 638 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 COPS7BQ9H9Q2 264 aaPredicted RBP16.53■□□□□ 0.24
CPSF4-209ENST00000465132 CUTCQ9NTM9 273 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 VTI1BQ9UEU0 232 aa16.53■□□□□ 0.24
CPSF4-209ENST00000465132 A0A1B0GX78 115 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 SLC28A1O00337 649 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 UBFD1O14562 309 aaKnown RBP16.52■□□□□ 0.24
CPSF4-209ENST00000465132 FFAR3O14843 346 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 DSCR3O14972 297 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 GPR42O15529 346 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 ZNF749O43361 778 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 RGS14O43566 566 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 PRAMEF4O60810 478 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 SEMA3DO95025 777 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 PRAMEF9Q5VWM5 478 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 KHDRBS2Q5VWX1 349 aaKnown RBP16.52■□□□□ 0.24
CPSF4-209ENST00000465132 FAM198BQ6UWH4 519 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 RGS9BPQ6ZS82 235 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 VN1R4Q7Z5H5 301 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 FDCSPQ8NFU4 85 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 OR2L5Q8NG80 312 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 CREB3L4Q8TEY5 395 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 C7orf26Q96N11 449 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 MTERF1Q99551 399 aaKnown RBP16.52■□□□□ 0.24
CPSF4-209ENST00000465132 TBCDQ9BTW9 1192 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 SLC6A16Q9GZN6 736 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 REXO4Q9GZR2 422 aaKnown RBP16.52■□□□□ 0.24
CPSF4-209ENST00000465132 SPRTNQ9H040 489 aaPredicted RBP16.52■□□□□ 0.24
CPSF4-209ENST00000465132 SPNS1Q9H2V7 528 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 RIC8BQ9NVN3 520 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 NDOR1Q9UHB4 597 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 HAO1Q9UJM8 370 aa16.52■□□□□ 0.24
CPSF4-209ENST00000465132 RUVBL1Q9Y265 456 aaKnown RBP16.52■□□□□ 0.24
CPSF4-209ENST00000465132 SPTAN1Q13813 2472 aaKnown RBP16.52■□□□□ 0.23
CPSF4-209ENST00000465132 LRIT2A6NDA9 550 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 TRPC5OSA6NMA1 111 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 H0YIG0 161 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 PPP6CO00743 305 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 DPM1O60762 260 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 SNNO75324 88 aaPredicted RBP16.51■□□□□ 0.23
CPSF4-209ENST00000465132 PCSK2P16519 638 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 ALOX12P18054 663 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 ALAS2P22557 587 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 INPP5JQ15735 1006 aaPredicted RBP16.51■□□□□ 0.23
CPSF4-209ENST00000465132 AP5B1Q2VPB7 878 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 ADPRMQ3LIE5 342 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 TOR1AIP1Q5JTV8 583 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 DEPDC1Q5TB30 811 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 KANK2Q63ZY3 851 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 HIST2H2BCQ6DN03 193 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 TMEM214Q6NUQ4 689 aaKnown RBP16.51■□□□□ 0.23
CPSF4-209ENST00000465132 JMJD6Q6NYC1 403 aaPredicted RBP16.51■□□□□ 0.23
CPSF4-209ENST00000465132 TTLL10Q6ZVT0 673 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 WDR75Q8IWA0 830 aaKnown RBP16.51■□□□□ 0.23
CPSF4-209ENST00000465132 NUDT9Q9BW91 350 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 MS4A8Q9BY19 250 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 DMRT3Q9NQL9 472 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 VPS29Q9UBQ0 182 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 PLEKHB1Q9UF11 243 aaPredicted RBP16.51■□□□□ 0.23
CPSF4-209ENST00000465132 ZNF225Q9UK10 706 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 SPACA6W5XKT8 324 aa16.51■□□□□ 0.23
CPSF4-209ENST00000465132 NRP2O60462 931 aa16.5■□□□□ 0.23
CPSF4-209ENST00000465132 SEMA7AO75326 666 aa16.5■□□□□ 0.23
CPSF4-209ENST00000465132 MYO1DO94832 1006 aa16.5■□□□□ 0.23
CPSF4-209ENST00000465132 PDYNP01213 254 aa16.5■□□□□ 0.23
CPSF4-209ENST00000465132 CHRNGP07510 517 aa16.5■□□□□ 0.23
CPSF4-209ENST00000465132 IL10P22301 178 aa16.5■□□□□ 0.23
CPSF4-209ENST00000465132 DCDP81605 110 aaKnown RBP16.5■□□□□ 0.23
CPSF4-209ENST00000465132 HKDC1Q2TB90 917 aa16.5■□□□□ 0.23
CPSF4-209ENST00000465132 PRR30Q53SZ7 412 aaPredicted RBP16.5■□□□□ 0.23
CPSF4-209ENST00000465132 SPIN4Q56A73 249 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms