RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 ZNF544Q6NX49 715 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 TMPRSS11AQ6ZMR5 421 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 OLIG3Q7RTU3 272 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 C7orf34Q96L11 122 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 COL21A1Q96P44 957 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 SDHCQ99643 169 aaPredicted RBP11.91□□□□□ -0.5
HDAC4-208ENST00000463007 C2orf49Q9BVC5 232 aaPredicted RBP11.91□□□□□ -0.5
HDAC4-208ENST00000463007 CRISPLD2Q9H0B8 497 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 GPBP1L1Q9HC44 474 aaPredicted RBP11.91□□□□□ -0.5
HDAC4-208ENST00000463007 COQ3Q9NZJ6 369 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 TBC1D24Q9ULP9 559 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 YARS2Q9Y2Z4 477 aaKnown RBP11.91□□□□□ -0.5
HDAC4-208ENST00000463007 CLCA3PQ9Y6N3 262 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 DOCK6Q96HP0 2047 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 NOTCH4Q99466 2003 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 IGLV3-16A0A075B6K0 115 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 OR6C70A6NIJ9 312 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 PRRG1O14668 218 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 CD70P32970 193 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 CHI3L1P36222 383 aaPredicted RBP11.91□□□□□ -0.5
HDAC4-208ENST00000463007 LILRA6Q6PI73 481 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 SYCE2Q6PIF2 218 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 MMP21Q8N119 569 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 IQCF1Q8N6M8 205 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 TMEM169Q96HH4 297 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 DIRAS2Q96HU8 199 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 MCCC1Q96RQ3 725 aaPredicted RBP11.91□□□□□ -0.5
HDAC4-208ENST00000463007 ZBP1Q9H171 429 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 SGK2Q9HBY8 427 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 VPS29Q9UBQ0 182 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 MEIOCA2RUB1 952 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 TMEM202A6NGA9 273 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 CDRT1O95170 752 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 C6orf47O95873 294 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 TGFB1P01137 390 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 PRPS1L1P21108 318 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 MAPK8P45983 427 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 ATN1P54259 1190 aaPredicted RBP11.91□□□□□ -0.5
HDAC4-208ENST00000463007 WNT3P56703 355 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 B4GALNT1Q00973 533 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 RUNX1T1Q06455 604 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 FADDQ13158 208 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 TBCEQ15813 527 aaPredicted RBP11.91□□□□□ -0.5
HDAC4-208ENST00000463007 RPS26P11Q5JNZ5 115 aaPredicted RBP11.91□□□□□ -0.5
HDAC4-208ENST00000463007 ERAP2Q6P179 960 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 METTL2BQ6P1Q9 378 aaKnown RBP11.91□□□□□ -0.5
HDAC4-208ENST00000463007 WDR53Q7Z5U6 358 aaPredicted RBP11.91□□□□□ -0.5
HDAC4-208ENST00000463007 SERPINA11Q86U17 422 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 NXPE1Q8N323 547 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 ELMOD1Q8N336 334 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 TRMT61AQ96FX7 289 aaKnown RBP11.91□□□□□ -0.5
HDAC4-208ENST00000463007 DOHHQ9BU89 302 aa11.91□□□□□ -0.5
HDAC4-208ENST00000463007 CFAP20Q9Y6A4 193 aaKnown RBP11.91□□□□□ -0.5
HDAC4-208ENST00000463007 GON4LQ3T8J9 2241 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 CD22P20273 847 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 ITGB8P26012 769 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 AOAHP28039 575 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 RGNQ15493 299 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 NDUFA5Q16718 116 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 PYDC2Q56P42 97 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 TNFAIP8L2Q6P589 184 aaPredicted RBP11.9□□□□□ -0.5
HDAC4-208ENST00000463007 SHFQ7M4L6 423 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 OTOP2Q7RTS6 562 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 RNF130Q86XS8 419 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 LACC1Q8IV20 430 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 C11orf65Q8NCR3 313 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 SAMD11Q96NU1 681 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 ACAT2Q9BWD1 397 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 POLR2J2Q9GZM3 115 aaKnown RBP11.9□□□□□ -0.5
HDAC4-208ENST00000463007 RDH14Q9HBH5 336 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 MOV10Q9HCE1 1003 aaKnown RBP11.9□□□□□ -0.5
HDAC4-208ENST00000463007 SMURF1Q9HCE7 757 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 SPG21Q9NZD8 308 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 MOSPD1Q9UJG1 213 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 HS3ST2Q9Y278 367 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 CARD8Q9Y2G2 431 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 SLC35F4A4IF30 521 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 ENTPD6O75354 484 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 GASTP01350 101 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 URODP06132 367 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 LAG3P18627 525 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 MAPK1P28482 360 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 HBA1P69905 142 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 RETSATQ6NUM9 610 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 TSEN54Q7Z6J9 526 aaKnown RBP11.9□□□□□ -0.5
HDAC4-208ENST00000463007 RASGRP3Q8IV61 690 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 HTATIP2Q9BUP3 242 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 ZDHHC6Q9H6R6 413 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 DYRK4Q9NR20 520 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 DNAJC11Q9NVH1 559 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 C5AR2Q9P296 337 aa11.9□□□□□ -0.5
HDAC4-208ENST00000463007 PLD2O14939 933 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 TGM5O43548 720 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 SEMA3DO95025 777 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 GADD45GO95257 159 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 SRCP12931 536 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 GPX2P18283 190 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 VEGFBP49765 207 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 PTPN5P54829 565 aa11.89□□□□□ -0.51
HDAC4-208ENST00000463007 GPR33Q49SQ1 333 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms