RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 VPS9D1Q9Y2B5 631 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 PLXNA4Q9HCM2 1894 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 SNTNA6NMZ2 147 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 H3BN98 237 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 MYL12BO14950 172 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 SHOXO15266 292 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 AKAP8O43823 692 aaKnown RBP11.22□□□□□ -0.61
CPSF3-202ENST00000460593 TRBC1P01850 177 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 GSTM1P09488 218 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 PRPS2P11908 318 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 ARSBP15848 533 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 MYL12AP19105 171 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 CPN2P22792 545 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 RPIAP49247 311 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 AP2S1P53680 142 aaPredicted RBP11.22□□□□□ -0.61
CPSF3-202ENST00000460593 SELENOWP63302 87 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 TAF10Q12962 218 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 ZNF284Q2VY69 593 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 ATAT1Q5SQI0 421 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 ANKRD54Q6NXT1 300 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 ASB18Q6ZVZ8 466 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 C9orf62Q8N4C0 152 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 ZBTB2Q8N680 514 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 ESX1Q8N693 406 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 BMPERQ8N8U9 685 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 TMEM145Q8NBT3 493 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 FBXO32Q969P5 355 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 SLC25A46Q96AG3 418 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 PSKH2Q96QS6 385 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 NMNAT1Q9HAN9 279 aaPredicted RBP11.22□□□□□ -0.61
CPSF3-202ENST00000460593 GPATCH2Q9NW75 528 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 MAP4K5Q9Y4K4 846 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 PCDHB11Q9Y5F2 797 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 SPIN1Q9Y657 262 aaPredicted RBP11.22□□□□□ -0.61
CPSF3-202ENST00000460593 MYO16Q9Y6X6 1858 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 GREB1Q4ZG55 1949 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 PDE4DIPQ5VU43 2346 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 TRBV4-1A0A0J9YWV2 114 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 TPST2O60704 377 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 F2P00734 622 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 TP53P04637 393 aaPredicted RBP11.21□□□□□ -0.61
CPSF3-202ENST00000460593 ANXA8P13928 327 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 DDCP20711 480 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 HLA-DMAP28067 261 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 CD79BP40259 229 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 AVPR1BP47901 424 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 CTBP2P56545 445 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 DBPQ10586 325 aaPredicted RBP11.21□□□□□ -0.61
CPSF3-202ENST00000460593 MRPL28Q13084 256 aaKnown RBP11.21□□□□□ -0.61
CPSF3-202ENST00000460593 FCN2Q15485 313 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 ZNF57Q68EA5 555 aaPredicted RBP11.21□□□□□ -0.61
CPSF3-202ENST00000460593 USP30Q70CQ3 517 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 TCEANCQ8N8B7 351 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 FOXJ1Q92949 421 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 NELL2Q99435 816 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 SPATA9Q9BWV2 254 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 ACER3Q9NUN7 267 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 ASIC5Q9NY37 505 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 IL17CQ9P0M4 197 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 FBXO9Q9UK97 447 aaPredicted RBP11.21□□□□□ -0.61
CPSF3-202ENST00000460593 PADI2Q9Y2J8 665 aa11.21□□□□□ -0.61
CPSF3-202ENST00000460593 FCF1Q9Y324 198 aaKnown RBP11.21□□□□□ -0.61
CPSF3-202ENST00000460593 HYKKA2RU49 373 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 DRGXA6NNA5 263 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 GABRR3A8MPY1 467 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 ETHE1O95571 254 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 CRISP1P54107 249 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 RAB8AP61006 207 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 HSPA14Q0VDF9 509 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 ERICH5Q6P6B1 374 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 TMEM65Q6PI78 240 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 CDH24Q86UP0 819 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 SLC51BQ86UW2 128 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 LAS2Q8IYD9 372 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 THEM5Q8N1Q8 247 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 LMNTD1Q8N9Z9 388 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 C9orf43Q8TAL5 461 aaPredicted RBP11.21□□□□□ -0.62
CPSF3-202ENST00000460593 BTN2A2Q8WVV5 523 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 WDFY2Q96P53 400 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 DUSP26Q9BV47 211 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 FTSJ1Q9UET6 329 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 RAB23Q9ULC3 237 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 RIMKLBQ9ULI2 386 aa11.21□□□□□ -0.62
CPSF3-202ENST00000460593 SLC35F4A4IF30 521 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 TLR4O00206 839 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 LYRM1O43325 122 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 GADD45GO95257 159 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 GLULP15104 373 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 CR2P20023 1033 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 PSEN2P49810 448 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 PTPN5P54829 565 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 RRAS2P62070 204 aaPredicted RBP11.2□□□□□ -0.62
CPSF3-202ENST00000460593 LSM11P83369 360 aaKnown RBP eCLIP11.2□□□□□ -0.62
CPSF3-202ENST00000460593 CACNG1Q06432 222 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 RBBP4Q09028 425 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 ZMYND11Q15326 602 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 IFI44LQ53G44 452 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 CREB3L2Q70SY1 520 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 ZNF767PQ75MW2 155 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 HMGN2P46Q86SG4 172 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms