RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 RUNX2Q13950 521 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 MINDY4Q4G0A6 757 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 C10orf62Q5T681 223 aaPredicted RBP18.8■□□□□ 0.6
COL9A3-202ENST00000452372 KHDRBS2Q5VWX1 349 aaKnown RBP18.8■□□□□ 0.6
COL9A3-202ENST00000452372 TMEM205Q6UW68 189 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 UBE3DQ7Z6J8 389 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 CA13Q8N1Q1 262 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 RNF175Q8N4F7 328 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 MYRIPQ8NFW9 859 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 ZIM3Q96PE6 472 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 KCNC2Q96PR1 638 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 SERINC2Q96SA4 455 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 TBCDQ9BTW9 1192 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 ROGDIQ9GZN7 287 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 IQCGQ9H095 443 aaKnown RBP18.8■□□□□ 0.6
COL9A3-202ENST00000452372 OR51B5Q9H339 312 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 ATP13A2Q9NQ11 1180 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 LANCL2Q9NS86 450 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 ZNF225Q9UK10 706 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 FBXL4Q9UKA2 621 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 PPT2Q9UMR5 302 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 LOC102723996A0A087X1L8 192 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 A0A1W2PQ72 361 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 CLEC18AA5D8T8 446 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 MAGEB17A8MXT2 336 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 MKRN2OSH3BPM6 223 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 B3GALT2O43825 422 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 CEACAM4O75871 244 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 RNH1P13489 461 aaKnown RBP18.79■□□□□ 0.6
COL9A3-202ENST00000452372 CPA3P15088 417 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 ACPPP15309 386 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 JAK1P23458 1154 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 NEK2P51955 445 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 MTTPP55157 894 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 DNAJB13P59910 316 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 NAA20P61599 178 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 RPS13P62277 151 aaKnown RBP18.79■□□□□ 0.6
COL9A3-202ENST00000452372 TUBB8Q3ZCM7 444 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 BEND6Q5SZJ8 279 aaPredicted RBP18.79■□□□□ 0.6
COL9A3-202ENST00000452372 MFSD4BQ5TF39 518 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 FRG2Q64ET8 278 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 CLEC18BQ6UXF7 455 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 CROCCP2Q86T23 111 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 CCDC63Q8NA47 563 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 CLEC1AQ8NC01 280 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 CLEC18CQ8NCF0 446 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 PLPP5Q8NEB5 264 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 METTL21AQ8WXB1 218 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 FRG2BQ96QU4 278 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 SMC6Q96SB8 1091 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 MESP1Q9BRJ9 268 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 COPS7BQ9H9Q2 264 aaPredicted RBP18.79■□□□□ 0.6
COL9A3-202ENST00000452372 RRAGDQ9NQL2 400 aaPredicted RBP18.79■□□□□ 0.6
COL9A3-202ENST00000452372 OXSMQ9NWU1 459 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 SENP1Q9P0U3 644 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 MID2Q9UJV3 735 aa18.79■□□□□ 0.6
COL9A3-202ENST00000452372 DOCK10Q96BY6 2186 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 OR2W5A6NFC9 320 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 RGS16O15492 202 aaPredicted RBP18.78■□□□□ 0.6
COL9A3-202ENST00000452372 SH3BGRLO75368 114 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 MLYCDO95822 493 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 C8orf89P0DMQ9 161 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 ARFIP1P53367 373 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 SOX8P57073 446 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 RHAGQ02094 409 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 SRSF1Q07955 248 aaKnown RBP eCLIP18.78■□□□□ 0.61e-11■■□□□ 11.5
COL9A3-202ENST00000452372 KLRB1Q12918 225 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 CUL3Q13618 768 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 AP5B1Q2VPB7 878 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 CEP85LQ5SZL2 805 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 TTC19Q6DKK2 380 aaPredicted RBP18.78■□□□□ 0.6
COL9A3-202ENST00000452372 FAAH2Q6GMR7 532 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 LETMD1Q6P1Q0 360 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 LRIG3Q6UXM1 1119 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 NDUFAF7Q7L592 441 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 ARMC2Q8NEN0 867 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 RGMAQ96B86 450 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 C8orf44Q96CB5 159 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 MTFMTQ96DP5 389 aaKnown RBP18.78■□□□□ 0.6
COL9A3-202ENST00000452372 ZNF382Q96SR6 550 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 CENPKQ9BS16 269 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 RBCK1Q9BYM8 510 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 GSTO2Q9H4Y5 243 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 TRPS1Q9UHF7 1281 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 STK38LQ9Y2H1 464 aa18.78■□□□□ 0.6
COL9A3-202ENST00000452372 PCDHGA9Q9Y5G4 932 aaKnown RBP18.78■□□□□ 0.6
COL9A3-202ENST00000452372 PSMD12O00232 456 aaPredicted RBP18.77■□□□□ 0.6
COL9A3-202ENST00000452372 B4GALT2O60909 372 aa18.77■□□□□ 0.6
COL9A3-202ENST00000452372 SPAG7O75391 227 aa18.77■□□□□ 0.6
COL9A3-202ENST00000452372 OR4F21O95013 312 aa18.77■□□□□ 0.6
COL9A3-202ENST00000452372 SCELO95171 688 aa18.77■□□□□ 0.6
COL9A3-202ENST00000452372 CREB1P16220 341 aa18.77■□□□□ 0.6
COL9A3-202ENST00000452372 ATP5A1P25705 553 aaKnown RBP18.77■□□□□ 0.6
COL9A3-202ENST00000452372 CERS1P27544 350 aa18.77■□□□□ 0.6
COL9A3-202ENST00000452372 TSFMP43897 325 aaKnown RBP18.77■□□□□ 0.6
COL9A3-202ENST00000452372 NAGLUP54802 743 aa18.77■□□□□ 0.6
COL9A3-202ENST00000452372 LCP2Q13094 533 aa18.77■□□□□ 0.6
COL9A3-202ENST00000452372 IFT88Q13099 833 aa18.77■□□□□ 0.6
COL9A3-202ENST00000452372 AIMP2Q13155 320 aaKnown RBP18.77■□□□□ 0.6
COL9A3-202ENST00000452372 OR4C11Q6IEV9 310 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms