RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 MAP4K5Q9Y4K4 846 aa16.13■□□□□ 0.17
PRPF40A-204ENST00000450303 ASB1Q9Y576 335 aa16.13■□□□□ 0.17
PRPF40A-204ENST00000450303 FLNCQ14315 2725 aa16.13■□□□□ 0.17
PRPF40A-204ENST00000450303 SHANK1Q9Y566 2161 aa16.13■□□□□ 0.17
PRPF40A-204ENST00000450303 LCMT2O60294 686 aaKnown RBP16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 VPS4BO75351 444 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 CRCPO75575 148 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 CLDN9O95484 217 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 ALPPP05187 535 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 C1GALT1C1LP0DN25 315 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 CDH1P12830 882 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 GNLYP22749 145 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 GRK3P35626 688 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 CCR8P51685 355 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 EMP2P54851 167 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 SOX8P57073 446 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 MAT1AQ00266 395 aaKnown RBP16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 RELAQ04206 551 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 PCDH1Q08174 1060 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 BST1Q10588 318 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 CHIT1Q13231 466 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 DSG2Q14126 1118 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 XKR6Q5GH73 641 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 PAGE2BQ5JRK9 111 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 GARNL3Q5VVW2 1013 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 LIPJQ5W064 366 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 NXPE4Q6UWF7 544 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 VN1R4Q7Z5H5 301 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 TMPRSS11BQ86T26 416 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 HPS6Q86YV9 775 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 SHISA5Q8N114 240 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 KRT78Q8N1N4 520 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 AFAP1L2Q8N4X5 818 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 OR9A4Q8NGU2 314 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 NEIL2Q969S2 332 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 PNPLA2Q96AD5 504 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 NACC2Q96BF6 587 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 PTCD3Q96EY7 689 aaKnown RBP16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 NSUN5Q96P11 429 aaKnown RBP16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 ZNF382Q96SR6 550 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 ELAC2Q9BQ52 826 aaKnown RBP16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 AIF1LQ9BQI0 150 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 EFCAB11Q9BUY7 163 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 EHD1Q9H4M9 534 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 ZBTB26Q9HCK0 441 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 MID1IP1Q9NPA3 183 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 VPS4AQ9UN37 437 aa16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.12■□□□□ 0.17
PRPF40A-204ENST00000450303 IGLV3-12A0A075B6K2 115 aa16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 TXNDC9O14530 226 aa16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 TSPAN8P19075 237 aa16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 HNF4AP41235 474 aa16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 RPS15AP62244 130 aaKnown RBP16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 MEF2AQ02078 507 aaPredicted RBP16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 SRSF1Q07955 248 aaKnown RBP eCLIP16.11■□□□□ 0.172e-15■■■□□ 18.7
PRPF40A-204ENST00000450303 Q0VFX4 171 aa16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 UBAP2LQ14157 1087 aaKnown RBP16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 TBCCQ15814 346 aa16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 ARL13AQ5H913 290 aaPredicted RBP16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 ATG9BQ674R7 924 aa16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 C6orf89Q6UWU4 347 aa16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 RGS9BPQ6ZS82 235 aa16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 GPRIN3Q6ZVF9 776 aa16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 RPS27LQ71UM5 84 aaKnown RBP16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 PRSS41Q7RTY9 318 aa16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 MYLK4Q86YV6 388 aaPredicted RBP16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 ZADH2Q8N4Q0 377 aa16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 AMER2Q8N7J2 671 aa16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 UBE2E3Q969T4 207 aa16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 C19orf60Q96EN9 201 aa16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 MVB12AQ96EY5 273 aa16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 THOC3Q96J01 351 aaKnown RBP16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 PITHD1Q9GZP4 211 aaPredicted RBP16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 ILKAPQ9H0C8 392 aaPredicted RBP16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 ZNF160Q9HCG1 818 aa16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 DOPEY2Q9Y3R5 2298 aa16.11■□□□□ 0.17
PRPF40A-204ENST00000450303 IDSB3KWA1 339 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 OR7A17O14581 309 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 JRKO75564 520 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 ESRRBO95718 433 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 ENO1P06733 434 aaKnown RBP16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 HEXBP07686 556 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 ACPPP15309 386 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 BCL6P41182 706 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 CASP2P42575 452 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 AVPR1BP47901 424 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 EEF1A2Q05639 463 aaKnown RBP16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 NDUFA9Q16795 377 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 IRAK1BP1Q5VVH5 260 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 SLCO4C1Q6ZQN7 724 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 SPATA21Q7Z572 469 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 CUZD1Q86UP6 607 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 CISD2Q8N5K1 135 aaKnown RBP16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 KCT2Q8NC54 265 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 ABHD11Q8NFV4 315 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 ZCCHC10Q8TBK6 192 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 AGAP11Q8TF27 550 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 REPS1Q96D71 796 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 MOCOSQ96EN8 888 aa16.1■□□□□ 0.17
PRPF40A-204ENST00000450303 PRM3Q9NNZ6 103 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms