RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 SERINC2Q96SA4 455 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 NAPGQ99747 312 aaPredicted RBP6.62□□□□□ -1.35
VPS41-208ENST00000448833 CPNE1Q99829 537 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 VKORC1Q9BQB6 163 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 EFCAB11Q9BUY7 163 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 COPS7BQ9H9Q2 264 aaPredicted RBP6.62□□□□□ -1.35
VPS41-208ENST00000448833 TIMMDC1Q9NPL8 285 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 TRMT1Q9NXH9 659 aaKnown RBP6.62□□□□□ -1.35
VPS41-208ENST00000448833 ANKRD10Q9NXR5 420 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 ADGRE2Q9UHX3 823 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 PPIEQ9UNP9 301 aaKnown RBP6.62□□□□□ -1.35
VPS41-208ENST00000448833 MEMO1Q9Y316 297 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 CLCA3PQ9Y6N3 262 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 EML6Q6ZMW3 1958 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 TACC2O95359 2948 aa6.62□□□□□ -1.35
VPS41-208ENST00000448833 CACNA1CQ13936 2221 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 IGKV3D-11A0A0A0MRZ8 115 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 CCDC189A1A4V9 331 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 FAM187AA6NFU0 413 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 USP27XA6NNY8 438 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 CDC7O00311 574 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 TFECO14948 347 aaPredicted RBP6.61□□□□□ -1.35
VPS41-208ENST00000448833 ERI3O43414 337 aaKnown RBP6.61□□□□□ -1.35
VPS41-208ENST00000448833 CTNSO60931 367 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 BANF1O75531 89 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 STK16O75716 305 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 MYO1DO94832 1006 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 CLDN14O95500 239 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 TUBB4AP04350 444 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 CCDC166P0CW27 439 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 COX7A2P14406 83 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 MAOAP21397 527 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 SPRP35270 261 aaPredicted RBP6.61□□□□□ -1.35
VPS41-208ENST00000448833 PTGS2P35354 604 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 SLC6A12P48065 614 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 KCNC1P48547 511 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 SSR4P51571 173 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 MTTPP55157 894 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 RAB38P57729 211 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 TAS2R39P59534 338 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 OLR1P78380 273 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 BTG2P78543 158 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 STX4Q12846 297 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 HYAL2Q12891 473 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 BMPR2Q13873 1038 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 TGFBIQ15582 683 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 TSNQ15631 228 aaKnown RBP6.61□□□□□ -1.35
VPS41-208ENST00000448833 ELAVL1Q15717 326 aaKnown RBP6.61□□□□□ -1.35
VPS41-208ENST00000448833 TBCCQ15814 346 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 C3AR1Q16581 482 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 PDK4Q16654 411 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 KCTD19Q17RG1 926 aaPredicted RBP6.61□□□□□ -1.35
VPS41-208ENST00000448833 TMEM35AQ53FP2 167 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 ARHGAP11AQ6P4F7 1023 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 TRMT10BQ6PF06 316 aaKnown RBP6.61□□□□□ -1.35
VPS41-208ENST00000448833 CHSY3Q70JA7 882 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 CYP4Z2PQ8N1L4 340 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 CA13Q8N1Q1 262 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 MORN4Q8NDC4 146 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 NFAM1Q8NET5 270 aaPredicted RBP6.61□□□□□ -1.35
VPS41-208ENST00000448833 OR5L2Q8NGL0 311 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 C16orf52Q8NHV5 167 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 STAG3L4Q8TBR4 150 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 CA5BP1Q8WTZ4 195 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 CCT6BQ92526 530 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 TSLPQ969D9 159 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 MTFMTQ96DP5 389 aaKnown RBP6.61□□□□□ -1.35
VPS41-208ENST00000448833 MS4A6EQ96DS6 147 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 CAPZA3Q96KX2 299 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 KCNC2Q96PR1 638 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 KRT12Q99456 494 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 CENPKQ9BS16 269 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 TBCDQ9BTW9 1192 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 RBCK1Q9BYM8 510 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 PHACTR1Q9C0D0 580 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 REXO4Q9GZR2 422 aaKnown RBP6.61□□□□□ -1.35
VPS41-208ENST00000448833 RHBGQ9H310 441 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 GRPEL1Q9HAV7 217 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 NMRAL1Q9HBL8 299 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 LYRM4Q9HD34 91 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 PRM3Q9NNZ6 103 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 ADAP2Q9NPF8 381 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 PRTFDC1Q9NRG1 225 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 DNAJC11Q9NVH1 559 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 MS4A12Q9NXJ0 267 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 WWOXQ9NZC7 414 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 WHRNQ9P202 907 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 SH3BGRL2Q9UJC5 107 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 FBXW2Q9UKT8 454 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 ERVK-11Q9UQG0 969 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 ADGRG4Q8IZF6 3080 aa6.61□□□□□ -1.35
VPS41-208ENST00000448833 PKDREJQ9NTG1 2253 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 TRBV11-1A0A0K0K1C0 115 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 NPEPPSL1A6NEC2 478 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 SYCE1LA8MT33 242 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 A8MVJ9 347 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 FOXO6A8MYZ6 492 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 ACOT7O00154 380 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 FANCGO15287 622 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 PEX1O43933 1283 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms