RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 SLC35F1Q5T1Q4 408 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 GPRC6AQ5T6X5 926 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 KCTD9Q7L273 389 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 LNX2Q8N448 690 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 CHCHD4Q8N4Q1 142 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 FCAMRQ8WWV6 532 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 RAB8BQ92930 207 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 HSPA12BQ96MM6 686 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 TMEM184CQ9NVA4 438 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 SMOXQ9NWM0 555 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 SLC39A1Q9NY26 324 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 TAS2R3Q9NYW6 316 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 SIX4Q9UIU6 781 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 ZFR2Q9UPR6 939 aaKnown RBP7.51□□□□□ -1.21
NEDD9-204ENST00000448183 STYXL1Q9Y6J8 313 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 UPK3BL1B0FP48 263 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 UPK3BL2E5RIL1 263 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 CKMT1AP12532 417 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 DCKP27707 260 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 GRSF1Q12849 480 aaKnown RBP eCLIP7.51□□□□□ -1.21
NEDD9-204ENST00000448183 CLCA4Q14CN2 919 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 SPHARQ15513 63 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 LRRN1Q6UXK5 716 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 Q6ZVU0 165 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 OSTM1Q86WC4 334 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 CARM1Q86X55 608 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 ZDHHC14Q8IZN3 488 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 DCAF4L2Q8NA75 395 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 C7orf57Q8NEG2 295 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 COQ8AQ8NI60 647 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 LMO3Q8TAP4 145 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 FUNDC2Q9BWH2 189 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 SEC61A2Q9H9S3 476 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 FARSAQ9Y285 508 aaKnown RBP7.51□□□□□ -1.21
NEDD9-204ENST00000448183 PCDHB14Q9Y5E9 798 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 HSPE1-MOB4S4R3N1 261 aa7.51□□□□□ -1.21
NEDD9-204ENST00000448183 A0A1W2PRU2 124 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 SMAD9O15198 467 aaKnown RBP7.5□□□□□ -1.21
NEDD9-204ENST00000448183 NARSO43776 548 aaKnown RBP7.5□□□□□ -1.21
NEDD9-204ENST00000448183 KIAA0513O60268 411 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 EEDO75530 441 aaKnown RBP7.5□□□□□ -1.21
NEDD9-204ENST00000448183 RBBP9O75884 186 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 ITGA5P08648 1049 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 CD1DP15813 335 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 UQCRC2P22695 453 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 UGT2B10P36537 528 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 GLP1RP43220 463 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 CTBP2P56545 445 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 RAB8AP61006 207 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 ARHGAP1Q07960 439 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 NFATC3Q12968 1075 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 NPRL3Q12980 569 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 IRF5Q13568 498 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 DEFB115Q30KQ5 88 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 CHRDL2Q6WN34 429 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 ASRGL1Q7L266 308 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 ACTR6Q9GZN1 396 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 ABCG5Q9H222 651 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 FAM118AQ9NWS6 357 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 EBF1Q9UH73 591 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 MAGED1Q9Y5V3 778 aaPredicted RBP7.5□□□□□ -1.21
NEDD9-204ENST00000448183 FCER2P06734 321 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 SLC35E2BP0CK96 405 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 GSTM2P28161 218 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 PPP5CP53041 499 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 FXYD6P3P58550 94 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 AIMP2Q13155 320 aaKnown RBP7.5□□□□□ -1.21
NEDD9-204ENST00000448183 PTPRCAPQ14761 206 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.5□□□□□ -1.214e-7■■□□□ 12
NEDD9-204ENST00000448183 PUS10Q3MIT2 529 aaKnown RBP7.5□□□□□ -1.21
NEDD9-204ENST00000448183 UNC50Q53HI1 259 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 CDKL4Q5MAI5 379 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 PLEKHG7Q6ZR37 379 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 ZFAND4Q86XD8 727 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 DCUN1D3Q8IWE4 304 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 TIGD4Q8IY51 512 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 UBQLNLQ8IYU4 475 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 OR9A1PQ8NGU1 263 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 BBS10Q8TAM1 723 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 NSMAFQ92636 917 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 TMEM41AQ96HV5 264 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 FCRL3Q96P31 734 aaPredicted RBP7.5□□□□□ -1.21
NEDD9-204ENST00000448183 PIP5K1AQ99755 562 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 TP63Q9H3D4 680 aaPredicted RBP7.5□□□□□ -1.21
NEDD9-204ENST00000448183 SDHAF3Q9NRP4 125 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 GSKIPQ9P0R6 139 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 NPIPA5E9PKD4 350 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 SLC1A7O00341 560 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 EEF1E1O43324 174 aaKnown RBP7.5□□□□□ -1.21
NEDD9-204ENST00000448183 PRKYO43930 277 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 FOXD2O60548 495 aaPredicted RBP7.5□□□□□ -1.21
NEDD9-204ENST00000448183 AHSA1O95433 338 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 ZBTB48P10074 688 aaPredicted RBP7.5□□□□□ -1.21
NEDD9-204ENST00000448183 COQ5Q5HYK3 327 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 PLEKHS1Q5SXH7 462 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 BLOC1S3Q6QNY0 202 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 ENPP7Q6UWV6 458 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 UBE2Q1Q7Z7E8 422 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 TMEM135Q86UB9 458 aa7.5□□□□□ -1.21
NEDD9-204ENST00000448183 NRSN1Q8IZ57 195 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms