RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 ZBTB5O15062 677 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 EDIL3O43854 480 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 ATP9AO75110 1047 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 RPS6KA5O75582 802 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 FGFR1OPO95684 399 aaKnown RBP3.84□□□□□ -1.79
VPS29-202ENST00000447578 IGHV4-30-4P0DP06 118 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 POLR2CP19387 275 aaPredicted RBP3.84□□□□□ -1.79
VPS29-202ENST00000447578 IL10P22301 178 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 JAK1P23458 1154 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 ALDH1B1P30837 517 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 PTGER4P35408 488 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 CDX1P47902 265 aaPredicted RBP3.84□□□□□ -1.79
VPS29-202ENST00000447578 ZNF131P52739 623 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 ISL1P61371 349 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 MAT1AQ00266 395 aaKnown RBP3.84□□□□□ -1.79
VPS29-202ENST00000447578 GABPB1Q06547 395 aaPredicted RBP3.84□□□□□ -1.79
VPS29-202ENST00000447578 DMTNQ08495 405 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 TCP10Q12799 353 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 ILF2Q12905 390 aaKnown RBP3.84□□□□□ -1.79
VPS29-202ENST00000447578 TRAF3Q13114 568 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 PDK1Q15118 436 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 MAPK11Q15759 364 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 TDRD12Q587J7 1177 aaKnown RBP3.84□□□□□ -1.79
VPS29-202ENST00000447578 LRRC38Q5VT99 294 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 PRAMEF8Q5VWM4 474 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 TRNP1Q6NT89 227 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 APOBEC3HQ6NTF7 200 aaKnown RBP3.84□□□□□ -1.79
VPS29-202ENST00000447578 PLEKHM3Q6ZWE6 761 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 ZNF771Q7L3S4 317 aaPredicted RBP3.84□□□□□ -1.79
VPS29-202ENST00000447578 KIAA1328Q86T90 577 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 FJX1Q86VR8 437 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 AMIGO1Q86WK6 493 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 APCDD1Q8J025 514 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 HDDC3Q8N4P3 179 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 ARL6IP6Q8N6S5 226 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 KIAA0895Q8NCT3 520 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 CCDC107Q8WV48 283 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 FIG4Q92562 907 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 PRCCQ92733 491 aaPredicted RBP3.84□□□□□ -1.79
VPS29-202ENST00000447578 AP2M1Q96CW1 435 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 RTP4Q96DX8 246 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 EEF2KMTQ96G04 330 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 OXNAD1Q96HP4 312 aaPredicted RBP3.84□□□□□ -1.79
VPS29-202ENST00000447578 CDKN2AIPNLQ96HQ2 116 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 INPP4AQ96PE3 977 aaPredicted RBP3.84□□□□□ -1.79
VPS29-202ENST00000447578 MYADMQ96S97 322 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 NAPGQ99747 312 aaPredicted RBP3.84□□□□□ -1.79
VPS29-202ENST00000447578 TSG101Q99816 390 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 PARD6BQ9BYG5 372 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 RAB34Q9BZG1 259 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 GSN-AS1Q9NRJ2 163 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 AGPAT5Q9NUQ2 364 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 DNAJC11Q9NVH1 559 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 ZNHIT6Q9NWK9 470 aaKnown RBP3.84□□□□□ -1.79
VPS29-202ENST00000447578 NINJ2Q9NZG7 142 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 TRIM10Q9UDY6 481 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 GUCA1BQ9UMX6 200 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 TFR2Q9UP52 801 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 TRIM17Q9Y577 477 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 MYO3BQ8WXR4 1341 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 LY75O60449 1722 aa3.84□□□□□ -1.8
VPS29-202ENST00000447578 DDX60LQ5H9U9 1706 aaKnown RBP3.84□□□□□ -1.8
VPS29-202ENST00000447578 SBF2Q86WG5 1849 aa3.84□□□□□ -1.8
VPS29-202ENST00000447578 NAV1Q8NEY1 1877 aa3.84□□□□□ -1.8
VPS29-202ENST00000447578 TRAV24A0A0B4J272 114 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 PVALEFA0A1B0GWK0 134 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 CTAGE15A4D2H0 777 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 C5orf51A6NDU8 294 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 MID1O15344 667 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 ZNHIT1O43257 154 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 KCNJ13O60928 360 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 GLCEO94923 617 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 WDPCPO95876 746 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 TFAP2AP05549 437 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 LIPFP07098 398 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 MMP10P09238 476 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 SBK2P0C263 348 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 CTAGE8P0CG41 777 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 FAM106CPP0CH98 169 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 PNMA6AP0CW24 399 aaPredicted RBP3.83□□□□□ -1.8
VPS29-202ENST00000447578 ACP2P11117 423 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 IRF2P14316 349 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 CSF2RAP15509 400 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 GCFC2P16383 781 aaKnown RBP3.83□□□□□ -1.8
VPS29-202ENST00000447578 GM2AP17900 193 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 CYP2A7P20853 494 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 HMGB2P26583 209 aaKnown RBP3.83□□□□□ -1.8
VPS29-202ENST00000447578 CYLC1P35663 651 aaPredicted RBP3.83□□□□□ -1.8
VPS29-202ENST00000447578 SLC1A4P43007 532 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 PEX5P50542 639 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 DLX5P56178 289 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 SNAP25P60880 206 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 SEC61A1P61619 476 aaKnown RBP3.83□□□□□ -1.8
VPS29-202ENST00000447578 ZNF155Q12901 538 aaPredicted RBP3.83□□□□□ -1.8
VPS29-202ENST00000447578 GTF2H2Q13888 395 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 PDIA5Q14554 519 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 ZNF234Q14588 700 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 NPTX1Q15818 432 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 PTGISQ16647 500 aa3.83□□□□□ -1.8
VPS29-202ENST00000447578 WHAMMP3Q1A5X7 153 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms