RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 ALPPL2P10696 532 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 DGKAP23743 735 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 PSMB4P28070 264 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 ADRA1AP35348 466 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 HMGCLP35914 325 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 GPR1P46091 355 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 PCP4P48539 62 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 SPINT3P49223 89 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 NOVA1P51513 510 aaKnown RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 DCDC1P59894 354 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 SRP54P61011 504 aaKnown RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 GNG11P61952 73 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 PDE1BQ01064 536 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 SIX1Q15475 284 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 OASLQ15646 514 aaKnown RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 SLC1A5Q15758 541 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 SIRPB2Q5JXA9 342 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 PDPK2PQ6A1A2 396 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 TMEM88Q6PEY1 159 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 SLC30A9Q6PML9 568 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 ENPP7Q6UWV6 458 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 KDELC2Q7Z4H8 507 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 LINC00523Q86TU6 105 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 NAXDQ8IW45 347 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 SLC22A18ASQ8N1D0 253 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 SLC25A45Q8N413 288 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 TTC30BQ8N4P2 665 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 PAQR4Q8N4S7 273 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 ADPRHL1Q8NDY3 354 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 DEFB124Q8NES8 71 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 IPMKQ8NFU5 416 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 OR56A4Q8NGH8 313 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 CCDC110Q8TBZ0 833 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 BRSK1Q8TDC3 778 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 ACTRT1Q8TDG2 376 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 SETD7Q8WTS6 366 aaKnown RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 C1orf54Q8WWF1 131 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 SLC25A28Q96A46 364 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 SMIM14Q96QK8 99 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 TMEM121Q9BTD3 319 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 TUBB6Q9BUF5 446 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 FICDQ9BVA6 458 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 RIOK2Q9BVS4 552 aaKnown RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 WDR26Q9H7D7 661 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 LRRC40Q9H9A6 602 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 PLEKHA2Q9HB19 425 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 PAK5Q9P286 719 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 RNF14Q9UBS8 474 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 SNX12Q9UMY4 172 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 ZNF711Q9Y462 761 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 HS3ST3B1Q9Y662 390 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 NYNRINQ9P2P1 1898 aaKnown RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 DPPA5A6NC42 116 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 C2orf81A6NN90 581 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 ZNF814B7Z6K7 855 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 LMO7DNF2Z398 122 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 STX16-NPEPL1H3BU86 382 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 J3KRW8 73 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 AP3B1O00203 1094 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 PGRMC1O00264 195 aaKnown RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 STX16O14662 325 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 SCAMP1O15126 338 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 STX7O15400 261 aaKnown RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 AQP9O43315 295 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 TRIM16O95361 564 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 METTL18O95568 372 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 AP2A1O95782 977 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 GAS8O95995 478 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 IFNB1P01574 187 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 ATP1A1P05023 1023 aaKnown RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 IVLP07476 585 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 CTSEP14091 401 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 CHN1P15882 459 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 PRPH2P23942 346 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 TYK2P29597 1187 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 RPL22P35268 128 aaKnown RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 DUSP3P51452 185 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 CDK3Q00526 305 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 KHDRBS1Q07666 443 aaKnown RBP eCLIP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 MSLNQ13421 630 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 SNX1Q13596 522 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 PEX6Q13608 980 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 LAMB3Q13751 1172 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 ELOCQ15369 112 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 TAF1AQ15573 450 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 ALG11Q2TAA5 492 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 ZNF542PQ5EBM4 170 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 TPRG1LQ5T0D9 272 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 FAM182AQ5T1J6 154 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 N4BP2L1Q5TBK1 243 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 KCTD11Q693B1 232 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 RAET1GQ6H3X3 334 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 DEF8Q6ZN54 512 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 RFLNAQ6ZTI6 216 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 GPSM1Q86YR5 675 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 SLC25A41Q8N5S1 370 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 TRAM1L1Q8N609 369 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 EID2Q8N6I1 236 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 TMEM217Q8N7C4 229 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 PRELID2Q8N945 189 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms