RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 TPP2P29144 1249 aaPredicted RBP12.09□□□□□ -0.47
LINC00339-202ENST00000416769 CRABP2P29373 138 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 TYK2P29597 1187 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 RAB10P61026 200 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 ABATP80404 500 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 PDAP1Q13442 181 aaKnown RBP12.09□□□□□ -0.47
LINC00339-202ENST00000416769 BMPR2Q13873 1038 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 NAA25Q14CX7 972 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 ZKSCAN8Q15776 578 aaPredicted RBP12.09□□□□□ -0.47
LINC00339-202ENST00000416769 NDUFA9Q16795 377 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 MEP1AQ16819 746 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 KRT71Q3SY84 523 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 SLC25A25Q6KCM7 469 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 PAQR3Q6TCH7 311 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 CYP4X1Q8N118 509 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 CD200R1Q8TD46 325 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 MZB1Q8WU39 189 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 SREK1Q8WXA9 508 aaKnown RBP12.09□□□□□ -0.47
LINC00339-202ENST00000416769 TM4SF19Q96DZ7 209 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 C14orf79Q96F83 325 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 UCK2Q9BZX2 261 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 ENKD1Q9H0I2 346 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 ATG10Q9H0Y0 220 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 SPNS1Q9H2V7 528 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 LRFN1Q9P244 771 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 CTNNAL1Q9UBT7 734 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 TRMT6Q9UJA5 497 aaKnown RBP12.09□□□□□ -0.47
LINC00339-202ENST00000416769 PPT2Q9UMR5 302 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 FAM90A27PA6NNH2 459 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 GFYI3L273 518 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 NME2P1O60361 137 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 B4GALT2O60909 372 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 SLC25A12O75746 678 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 WISP3O95389 354 aaPredicted RBP12.08□□□□□ -0.48
LINC00339-202ENST00000416769 ALDOAP04075 364 aaKnown RBP12.08□□□□□ -0.48
LINC00339-202ENST00000416769 C2P06681 752 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 CDH1P12830 882 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 CD46P15529 392 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 ZNF24P17028 368 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 NME2P22392 152 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 MAGEA12P43365 314 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 SERPINB8P50452 374 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 BTG2P78543 158 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 NSDHLQ15738 373 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 TTLL9Q3SXZ7 439 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 KRTCAP3Q53RY4 240 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 SPNS3Q6ZMD2 512 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 UBE2R2Q712K3 238 aaPredicted RBP12.08□□□□□ -0.48
LINC00339-202ENST00000416769 ASPGQ86U10 573 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 CD163Q86VB7 1156 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 NKAPQ8N5F7 415 aaKnown RBP12.08□□□□□ -0.48
LINC00339-202ENST00000416769 M1APQ8TC57 530 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 ACMSDQ8TDX5 336 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 CHTF18Q8WVB6 975 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 PGM2Q96G03 612 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 PDLIM5Q96HC4 596 aaKnown RBP12.08□□□□□ -0.48
LINC00339-202ENST00000416769 SPOCK3Q9BQ16 436 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 CAB39LQ9H9S4 337 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 MCCC2Q9HCC0 563 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 GPAMQ9HCL2 828 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 C19orf25Q9UFG5 118 aaPredicted RBP12.08□□□□□ -0.48
LINC00339-202ENST00000416769 ACOT9Q9Y305 439 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 PCDHGB6Q9Y5F9 930 aa12.08□□□□□ -0.48
LINC00339-202ENST00000416769 EML6Q6ZMW3 1958 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 ABCA4P78363 2273 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 A0A087X1B8 175 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 A0A1B0GTH9 108 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 A8MUA0 341 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 C4orf51C9J302 202 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 TXNDC9O14530 226 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 RGS16O15492 202 aaPredicted RBP12.07□□□□□ -0.48
LINC00339-202ENST00000416769 MPC1LP0DKB6 136 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 ENO3P13929 434 aaPredicted RBP12.07□□□□□ -0.48
LINC00339-202ENST00000416769 KRT15P19012 456 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 MAOAP21397 527 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 RGS4P49798 205 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 OR4D2P58180 307 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 IL2P60568 153 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 RELAQ04206 551 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 ACTN3Q08043 901 aaPredicted RBP12.07□□□□□ -0.48
LINC00339-202ENST00000416769 HYAL2Q12891 473 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 EXT1Q16394 746 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 PHKG1Q16816 387 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 TNFAIP8L3Q5GJ75 292 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 LRRC8EQ6NSJ5 796 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 C16orf47Q6ZP98 133 aaPredicted RBP12.07□□□□□ -0.48
LINC00339-202ENST00000416769 RAPH1Q70E73 1250 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 CMC1Q7Z7K0 106 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 CCDC71Q8IV32 467 aaPredicted RBP12.07□□□□□ -0.48
LINC00339-202ENST00000416769 GHDCQ8N2G8 530 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 FBXO15Q8NCQ5 510 aaPredicted RBP12.07□□□□□ -0.48
LINC00339-202ENST00000416769 ZNF740Q8NDX6 193 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 ELP5Q8TE02 316 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 POM121Q96HA1 1249 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 UBXN10Q96LJ8 280 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 TREX2Q9BQ50 279 aaPredicted RBP12.07□□□□□ -0.48
LINC00339-202ENST00000416769 ACBD3Q9H3P7 528 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 TMBIM4Q9HC24 238 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 ANKHQ9HCJ1 492 aa12.07□□□□□ -0.48
LINC00339-202ENST00000416769 CCDC177Q9NQR7 707 aaPredicted RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms