RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 C9P02748 559 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 GPX2P18283 190 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 KCNJ10P78508 379 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 DAB2P98082 770 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 SERPINA11Q86U17 422 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.8□□□□□ -0.36
VPS54-203ENST00000409558 ENTHD1Q8IYW4 607 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 BORCS5Q969J3 196 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 TMEM203Q969S6 136 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 DACH2Q96NX9 599 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 FAM129BQ96TA1 746 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 WFDC6Q9BQY6 131 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 DOHHQ9BU89 302 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 TEX10Q9NXF1 929 aaPredicted RBP12.8□□□□□ -0.36
VPS54-203ENST00000409558 RNF6Q9Y252 685 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 MAN2B2Q9Y2E5 1009 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 SLC28A2O43868 658 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 GADD45GO95257 159 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 PRNPP04156 253 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 TTKP33981 857 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 MLLT1Q03111 559 aaPredicted RBP12.8□□□□□ -0.36
VPS54-203ENST00000409558 MAD2L1BPQ15013 274 aaPredicted RBP12.8□□□□□ -0.36
VPS54-203ENST00000409558 ZNF605Q86T29 641 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 TMEM145Q8NBT3 493 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 RELTQ969Z4 430 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 TIFAQ96CG3 184 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 NLNQ9BYT8 704 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 CEP44Q9C0F1 390 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 CXorf36Q9H7Y0 433 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 USE1Q9NZ43 259 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 NPC1O15118 1278 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 ADH1CP00326 375 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 FAM9CQ8IZT9 166 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 C7orf57Q8NEG2 295 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 OR14C36Q8NHC7 312 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 Q96MT0 163 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 CACNA1CQ13936 2221 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 NARSO43776 548 aaKnown RBP12.79□□□□□ -0.36
VPS54-203ENST00000409558 GCM2O75603 506 aaPredicted RBP12.79□□□□□ -0.36
VPS54-203ENST00000409558 LIPAP38571 399 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 SSR2P43308 183 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 SP140Q13342 867 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 PIN1Q13526 163 aaPredicted RBP12.79□□□□□ -0.36
VPS54-203ENST00000409558 IFI44LQ53G44 452 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 NXPE4Q6UWF7 544 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 CCDC103Q8IW40 242 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 FLCNQ8NFG4 579 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 FGF13Q92913 245 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 KCNS3Q9BQ31 491 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 OR51E2Q9H255 320 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 SACM1LQ9NTJ5 587 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 MS4A12Q9NXJ0 267 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 GBF1Q92538 1859 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 SH3PXD2BA1X283 911 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 M0R3H8 397 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 TBX1O43435 398 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 FUCA1P04066 466 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 GTF2E2P29084 291 aaKnown RBP12.79□□□□□ -0.36
VPS54-203ENST00000409558 BUD31P41223 144 aaPredicted RBP12.79□□□□□ -0.36
VPS54-203ENST00000409558 ASMTP46597 345 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 ID2Q02363 134 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 SPATS1Q496A3 300 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 ZDHHC20Q5W0Z9 365 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 SLC16A12Q6ZSM3 486 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 DPPA4Q7L190 304 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 PRAMEF25A6NGN4 478 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 A8MU76 341 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 EFCAB9A8MZ26 197 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 OR12D1P0DN82 309 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 C7P10643 843 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 GADD45AP24522 165 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 ZNF829Q3KNS6 432 aaPredicted RBP12.79□□□□□ -0.36
VPS54-203ENST00000409558 ANXA8L1Q5VT79 327 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 HDDC3Q8N4P3 179 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 HORMAD2Q8N7B1 307 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 CHTF18Q8WVB6 975 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 SLAMF7Q9NQ25 335 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 WDR37Q9Y2I8 494 aa12.79□□□□□ -0.36
VPS54-203ENST00000409558 SOD1P00441 154 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 SLC35G4P0C7Q5 338 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 CAMK1Q14012 370 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 FXNQ16595 210 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 RGS21Q2M5E4 152 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 TBC1D25Q3MII6 688 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 SPIN4Q56A73 249 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 C9orf64Q5T6V5 341 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 KDM4DQ6B0I6 523 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 TANGO2Q6ICL3 276 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 CCDC116Q8IYX3 515 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 UBE2J2Q8N2K1 259 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 DRAXINQ8NBI3 349 aaPredicted RBP12.78□□□□□ -0.36
VPS54-203ENST00000409558 OR8J2Q8NGG1 315 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 RPP25Q9BUL9 199 aaKnown RBP12.78□□□□□ -0.36
VPS54-203ENST00000409558 TAS2R9Q9NYW1 312 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 PCDHGB3Q9Y5G1 929 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 LYVE1Q9Y5Y7 322 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 AIREO43918 545 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 HPRP00739 348 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 AZGP1P25311 298 aaKnown RBP12.78□□□□□ -0.36
VPS54-203ENST00000409558 P2RY2P41231 377 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms