RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 PWP1Q13610 501 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 KIAA0040Q15053 153 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 ZIC1Q15915 447 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 RFTN2Q52LD8 501 aaPredicted RBP12.8□□□□□ -0.36
LIMS1-204ENST00000409441 XKR6Q5GH73 641 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 PRAMEF9Q5VWM5 478 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 ATG9BQ674R7 924 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 OR52E8Q6IFG1 317 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 ZNF425Q6IV72 752 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 FBXO42Q6P3S6 717 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 ERMP1Q7Z2K6 904 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 ADCK2Q7Z695 626 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 PROSER1Q86XN7 944 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 ANKFN1Q8N957 763 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 OR4K1Q8NGD4 311 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 KLHL6Q8WZ60 621 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 TCTN2Q96GX1 697 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 KCTD14Q9BQ13 255 aaPredicted RBP12.8□□□□□ -0.36
LIMS1-204ENST00000409441 ACTR8Q9H981 624 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 C1orf109Q9NX04 203 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 AP3M1Q9Y2T2 418 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 PCM1Q15154 2024 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 KCNE1BA0A087WTH5 132 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 DHRS12A0PJE2 317 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 TMX2-CTNND1H3BSU7 103 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 AGRPO00253 132 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 FFAR3O14843 346 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 ARPC2O15144 300 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 GPR42O15529 346 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 UGDHO60701 494 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 RSL1D1O76021 490 aaKnown RBP12.79□□□□□ -0.36
LIMS1-204ENST00000409441 ANKRD34CP0C6C1 535 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 PRPS2P11908 318 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 FCGR1AP12314 374 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 BMP2P12643 396 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 ACPPP15309 386 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 NELFEP18615 380 aaKnown RBP12.79□□□□□ -0.36
LIMS1-204ENST00000409441 PSMA4P25789 261 aaKnown RBP12.79□□□□□ -0.36
LIMS1-204ENST00000409441 CASP2P42575 452 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 PDX1P52945 283 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 PCDH1Q08174 1060 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 TRA2AQ13595 282 aaKnown RBP eCLIP12.79□□□□□ -0.36
LIMS1-204ENST00000409441 DOC2AQ14183 400 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 PDK3Q15120 406 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 ISXQ2M1V0 245 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 HES3Q5TGS1 186 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 NANOGP8Q6NSW7 305 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 TMPRSS11BQ86T26 416 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 PAQR7Q86WK9 346 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 KMT5CQ86Y97 462 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 C19orf47Q8N9M1 422 aaKnown RBP12.79□□□□□ -0.36
LIMS1-204ENST00000409441 DNAJB8Q8NHS0 232 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 DNAJB14Q8TBM8 379 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 LRTOMTQ8WZ04 291 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 EME1Q96AY2 570 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 SLC45A3Q96JT2 553 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 SLC41A2Q96JW4 573 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 DPY30Q9C005 99 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 EHD1Q9H4M9 534 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 ZNF768Q9H5H4 540 aaKnown RBP12.79□□□□□ -0.36
LIMS1-204ENST00000409441 NANOGQ9H9S0 305 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 PELI2Q9HAT8 420 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 FAM60AQ9NP50 221 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 PDE7BQ9NP56 450 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 C8orf4Q9NR00 106 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 CLCA2Q9UQC9 943 aa12.79□□□□□ -0.36
LIMS1-204ENST00000409441 CNOT1A5YKK6 2376 aaKnown RBP12.78□□□□□ -0.36
LIMS1-204ENST00000409441 OR2A25A4D2G3 310 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 EIF4E1BA6NMX2 242 aaKnown RBP12.78□□□□□ -0.36
LIMS1-204ENST00000409441 TXNDC9O14530 226 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 CSO75390 466 aaKnown RBP12.78□□□□□ -0.36
LIMS1-204ENST00000409441 IL6P05231 212 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 JUPP14923 745 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 MAPK1P28482 360 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 CCKBRP32239 447 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 MEF2AQ02078 507 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-204ENST00000409441 SLC2A7Q6PXP3 512 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 DLEU7Q6UYE1 221 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 FAM129CQ86XR2 697 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 ST13P4Q8IZP2 240 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-204ENST00000409441 OR8J3Q8NGG0 315 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 CANT1Q8WVQ1 401 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 ADAMTS14Q8WXS8 1223 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 WDR34Q96EX3 536 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 DEPDC7Q96QD5 511 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 HBEGFQ99075 208 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 AIF1LQ9BQI0 150 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 CHRNA10Q9GZZ6 450 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 GEMIN8Q9NWZ8 242 aaKnown RBP12.78□□□□□ -0.36
LIMS1-204ENST00000409441 SOHLH2Q9NX45 425 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 ANKMY1Q9P2S6 941 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 GMPR2Q9P2T1 348 aaKnown RBP12.78□□□□□ -0.36
LIMS1-204ENST00000409441 TMED5Q9Y3A6 229 aa12.78□□□□□ -0.36
LIMS1-204ENST00000409441 FEZF1A0PJY2 475 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 CTSVO60911 334 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 SEC22BO75396 215 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 KCNH1O95259 989 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 LINGO3P0C6S8 592 aa12.77□□□□□ -0.36
LIMS1-204ENST00000409441 ZNF26P17031 533 aaPredicted RBP12.77□□□□□ -0.36
LIMS1-204ENST00000409441 CXCR2P25025 360 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms